Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A3P12111 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A3P12111 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.82■□□□□ 0.28
COL6A3P12111 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A3P12111 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A3P12111 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A3P12111 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
COL6A3P12111 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A3P12111 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A3P12111 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A3P12111 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A3P12111 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COL6A3P12111 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A3P12111 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.82■□□□□ 0.28
COL6A3P12111 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A3P12111 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A3P12111 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A3P12111 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.82■□□□□ 0.28
COL6A3P12111 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A3P12111 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A3P12111 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A3P12111 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC16.82■□□□□ 0.28
COL6A3P12111 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A3P12111 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A3P12111 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A3P12111 FGFR3P1-201ENST00000449999 601 ntBASIC16.81■□□□□ 0.28
COL6A3P12111 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.81■□□□□ 0.28
COL6A3P12111 AC078819.1-201ENST00000547454 765 ntBASIC16.81■□□□□ 0.28
COL6A3P12111 AC012085.1-201ENST00000548270 765 ntBASIC16.81■□□□□ 0.28
COL6A3P12111 DNM1P30-201ENST00000563586 452 ntBASIC16.81■□□□□ 0.28
COL6A3P12111 AC026979.3-201ENST00000607315 403 ntBASIC16.81■□□□□ 0.28
COL6A3P12111 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
COL6A3P12111 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A3P12111 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A3P12111 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A3P12111 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
COL6A3P12111 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A3P12111 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.81■□□□□ 0.28
COL6A3P12111 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC16.81■□□□□ 0.28
COL6A3P12111 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A3P12111 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
COL6A3P12111 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A3P12111 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC16.81■□□□□ 0.28
COL6A3P12111 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC16.81■□□□□ 0.28
COL6A3P12111 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.81■□□□□ 0.28
COL6A3P12111 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A3P12111 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A3P12111 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
COL6A3P12111 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.81■□□□□ 0.28
COL6A3P12111 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A3P12111 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.81■□□□□ 0.28
COL6A3P12111 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A3P12111 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A3P12111 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
COL6A3P12111 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A3P12111 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A3P12111 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A3P12111 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
COL6A3P12111 AP001063.1-201ENST00000568332 529 ntBASIC16.81■□□□□ 0.28
COL6A3P12111 ETV2-207ENST00000619399 994 ntTSL 5 BASIC16.81■□□□□ 0.28
COL6A3P12111 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.81■□□□□ 0.28
COL6A3P12111 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
COL6A3P12111 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A3P12111 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A3P12111 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A3P12111 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A3P12111 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A3P12111 DNM1P51-201ENST00000558149 522 ntBASIC16.8■□□□□ 0.28
COL6A3P12111 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A3P12111 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC16.8■□□□□ 0.28
COL6A3P12111 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.8■□□□□ 0.28
COL6A3P12111 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.8■□□□□ 0.28
COL6A3P12111 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC16.8■□□□□ 0.28
COL6A3P12111 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A3P12111 DNAJB1P1-201ENST00000429417 1024 ntBASIC16.8■□□□□ 0.28
COL6A3P12111 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A3P12111 AL133466.1-201ENST00000447582 150 ntBASIC16.8■□□□□ 0.28
COL6A3P12111 HSPB1P2-201ENST00000448722 546 ntBASIC16.8■□□□□ 0.28
COL6A3P12111 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.8■□□□□ 0.28
COL6A3P12111 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC16.8■□□□□ 0.28
COL6A3P12111 SCARNA21-201ENST00000517026 139 ntBASIC16.8■□□□□ 0.28
COL6A3P12111 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC16.8■□□□□ 0.28
COL6A3P12111 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A3P12111 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC16.8■□□□□ 0.28
COL6A3P12111 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A3P12111 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A3P12111 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.8■□□□□ 0.28
COL6A3P12111 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A3P12111 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A3P12111 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A3P12111 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A3P12111 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A3P12111 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A3P12111 FAM197Y7-201ENST00000432892 766 ntBASIC16.79■□□□□ 0.28
COL6A3P12111 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC16.79■□□□□ 0.28
COL6A3P12111 AC012618.1-201ENST00000461223 412 ntBASIC16.79■□□□□ 0.28
COL6A3P12111 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC16.79■□□□□ 0.28
COL6A3P12111 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC16.79■□□□□ 0.28
COL6A3P12111 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A3P12111 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms