Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 AL358472.4-201ENST00000633140 710 ntBASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRIM49D1C9J1S8 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 AL353732.1-201ENST00000569618 1459 ntBASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 AC107918.2-201ENST00000530817 355 ntBASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 SART3-203ENST00000546611 1184 ntBASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.57■□□□□ 0.24
TRIM49D1C9J1S8 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 MTDHP4-201ENST00000600287 670 ntBASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRIM49D1C9J1S8 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms