Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.4■□□□□ 0.22
SSU72Q9NP77 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SSU72Q9NP77 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
SSU72Q9NP77 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.39■□□□□ 0.22
SSU72Q9NP77 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSU72Q9NP77 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SSU72Q9NP77 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSU72Q9NP77 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 AC136621.1-201ENST00000624017 2304 ntBASIC16.39■□□□□ 0.21
SSU72Q9NP77 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSU72Q9NP77 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSU72Q9NP77 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSU72Q9NP77 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SSU72Q9NP77 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSU72Q9NP77 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSU72Q9NP77 DUX4L26-201ENST00000489078 1255 ntBASIC16.39■□□□□ 0.21
SSU72Q9NP77 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SSU72Q9NP77 AC093827.2-201ENST00000512654 315 ntBASIC16.39■□□□□ 0.21
SSU72Q9NP77 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 AC107918.2-201ENST00000530817 355 ntBASIC16.39■□□□□ 0.21
SSU72Q9NP77 AC074051.2-201ENST00000565115 352 ntBASIC16.39■□□□□ 0.21
SSU72Q9NP77 AC005412.3-201ENST00000580309 715 ntBASIC16.39■□□□□ 0.21
SSU72Q9NP77 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSU72Q9NP77 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SSU72Q9NP77 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSU72Q9NP77 AC005332.1-201ENST00000577698 1310 ntBASIC16.39■□□□□ 0.21
SSU72Q9NP77 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
SSU72Q9NP77 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSU72Q9NP77 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSU72Q9NP77 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.38■□□□□ 0.21
SSU72Q9NP77 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.38■□□□□ 0.21
SSU72Q9NP77 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.38■□□□□ 0.21
SSU72Q9NP77 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.38■□□□□ 0.21
SSU72Q9NP77 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.38■□□□□ 0.21
SSU72Q9NP77 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.38■□□□□ 0.21
SSU72Q9NP77 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.38■□□□□ 0.21
SSU72Q9NP77 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.38■□□□□ 0.21
SSU72Q9NP77 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.38■□□□□ 0.21
SSU72Q9NP77 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 SLC25A6P2-201ENST00000497974 877 ntBASIC16.38■□□□□ 0.21
SSU72Q9NP77 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.38■□□□□ 0.21
SSU72Q9NP77 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.38■□□□□ 0.21
SSU72Q9NP77 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.38■□□□□ 0.21
SSU72Q9NP77 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SSU72Q9NP77 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.38■□□□□ 0.21
SSU72Q9NP77 AP002414.4-201ENST00000589764 1148 ntBASIC16.38■□□□□ 0.21
SSU72Q9NP77 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.38■□□□□ 0.21
SSU72Q9NP77 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.38■□□□□ 0.21
SSU72Q9NP77 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SSU72Q9NP77 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SSU72Q9NP77 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SSU72Q9NP77 U82695.1-201ENST00000635752 1889 ntBASIC16.37■□□□□ 0.21
SSU72Q9NP77 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SSU72Q9NP77 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.37■□□□□ 0.21
SSU72Q9NP77 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.37■□□□□ 0.21
SSU72Q9NP77 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SSU72Q9NP77 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms