Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 FTH1P14-201ENST00000482930 551 ntBASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 BRI3BPP1-201ENST00000594224 787 ntBASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 AC010328.2-201ENST00000597698 1111 ntBASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF541Q9H0D2 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 AC026954.1-201ENST00000429771 1293 ntBASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 PTP4A1P2-201ENST00000546033 454 ntBASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 AL021578.1-201ENST00000613646 709 ntBASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
ZNF541Q9H0D2 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 YBX1P6-201ENST00000442962 1002 ntBASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 AC124283.3-201ENST00000570869 594 ntBASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 AC244669.2-201ENST00000612320 853 ntBASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.47■□□□□ 0.71
ZNF541Q9H0D2 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 GPAA1P2-202ENST00000606848 1787 ntBASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC19.46■□□□□ 0.71
ZNF541Q9H0D2 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms