Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ABCD1P5-201ENST00000445663 754 ntBASIC14.49□□□□□ -0.09
NKX3-1Q99801 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 RBSN-204ENST00000449050 903 ntTSL 2 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 SDHD-206ENST00000528182 754 ntTSL 3 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 IRF5-214ENST00000613821 595 ntTSL 5 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.49□□□□□ -0.09
NKX3-1Q99801 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
NKX3-1Q99801 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
NKX3-1Q99801 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
NKX3-1Q99801 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 SOD2-201ENST00000337404 991 ntTSL 2 BASIC14.48□□□□□ -0.09
NKX3-1Q99801 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC14.48□□□□□ -0.09
NKX3-1Q99801 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC14.48□□□□□ -0.09
NKX3-1Q99801 TPM4P1-201ENST00000436100 807 ntBASIC14.48□□□□□ -0.09
NKX3-1Q99801 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC14.48□□□□□ -0.09
NKX3-1Q99801 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
NKX3-1Q99801 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC14.48□□□□□ -0.09
NKX3-1Q99801 MIR5100-201ENST00000579544 119 ntBASIC14.48□□□□□ -0.09
NKX3-1Q99801 GZMM-202ENST00000592501 941 ntTSL 3 BASIC14.48□□□□□ -0.09
NKX3-1Q99801 LINC01711-201ENST00000598340 967 ntBASIC14.48□□□□□ -0.09
NKX3-1Q99801 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC14.48□□□□□ -0.09
NKX3-1Q99801 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC14.48□□□□□ -0.09
NKX3-1Q99801 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC14.48□□□□□ -0.09
NKX3-1Q99801 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC14.48□□□□□ -0.09
NKX3-1Q99801 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.48□□□□□ -0.09
NKX3-1Q99801 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.48□□□□□ -0.09
NKX3-1Q99801 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
NKX3-1Q99801 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 GID4-202ENST00000376345 1391 ntTSL 3 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
NKX3-1Q99801 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
NKX3-1Q99801 HARS-204ENST00000438307 1789 ntTSL 2 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
NKX3-1Q99801 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 TLE1-202ENST00000376484 666 ntTSL 3 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
NKX3-1Q99801 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 FOSL1P1-201ENST00000511041 816 ntBASIC14.47□□□□□ -0.09
NKX3-1Q99801 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 CCNC-219ENST00000627680 896 ntTSL 5 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
NKX3-1Q99801 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
NKX3-1Q99801 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
NKX3-1Q99801 SIGLEC16-201ENST00000599858 1437 ntBASIC14.47□□□□□ -0.09
NKX3-1Q99801 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
NKX3-1Q99801 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms