Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.42■□□□□ 0.22
VPS35Q96QK1 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.42■□□□□ 0.22
VPS35Q96QK1 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 AL162727.3-201ENST00000635661 2787 ntBASIC16.41■□□□□ 0.22
VPS35Q96QK1 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 SPDYE11-202ENST00000450699 704 ntBASIC16.41■□□□□ 0.22
VPS35Q96QK1 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 AP000344.2-201ENST00000512987 629 ntBASIC16.41■□□□□ 0.22
VPS35Q96QK1 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 SPDYE9P-201ENST00000570642 692 ntBASIC16.41■□□□□ 0.22
VPS35Q96QK1 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 SPDYE10P-202ENST00000612005 668 ntBASIC16.41■□□□□ 0.22
VPS35Q96QK1 SPDYE8P-202ENST00000612377 668 ntBASIC16.41■□□□□ 0.22
VPS35Q96QK1 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 AC105339.1-204ENST00000636249 355 ntBASIC16.41■□□□□ 0.22
VPS35Q96QK1 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 AC018695.7-201ENST00000624587 2492 ntBASIC16.41■□□□□ 0.22
VPS35Q96QK1 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS35Q96QK1 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS35Q96QK1 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS35Q96QK1 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS35Q96QK1 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS35Q96QK1 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS35Q96QK1 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS35Q96QK1 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS35Q96QK1 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS35Q96QK1 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS35Q96QK1 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS35Q96QK1 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS35Q96QK1 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 AC254562.1-201ENST00000417586 456 ntBASIC16.4■□□□□ 0.22
VPS35Q96QK1 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 AC243562.1-201ENST00000560672 389 ntBASIC16.4■□□□□ 0.22
VPS35Q96QK1 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 AC139530.3-201ENST00000620344 690 ntBASIC16.4■□□□□ 0.22
VPS35Q96QK1 AL513210.1-201ENST00000629608 234 ntBASIC16.4■□□□□ 0.22
VPS35Q96QK1 AC134684.3-201ENST00000641758 218 ntBASIC16.4■□□□□ 0.22
VPS35Q96QK1 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS35Q96QK1 CICP6-201ENST00000457191 2729 ntBASIC16.4■□□□□ 0.22
VPS35Q96QK1 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS35Q96QK1 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS35Q96QK1 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS35Q96QK1 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS35Q96QK1 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
VPS35Q96QK1 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
VPS35Q96QK1 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms