Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
COL21A1Q96P44 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
COL21A1Q96P44 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL21A1Q96P44 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL21A1Q96P44 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.67■□□□□ 0.1
COL21A1Q96P44 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.67■□□□□ 0.1
COL21A1Q96P44 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
COL21A1Q96P44 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.67■□□□□ 0.1
COL21A1Q96P44 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.67■□□□□ 0.1
COL21A1Q96P44 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
COL21A1Q96P44 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
COL21A1Q96P44 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.66■□□□□ 0.1
COL21A1Q96P44 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 ZNF259P1-201ENST00000407656 1365 ntBASIC15.66■□□□□ 0.1
COL21A1Q96P44 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 HYMAI-201ENST00000635591 3347 ntBASIC15.66■□□□□ 0.1
COL21A1Q96P44 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
COL21A1Q96P44 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
COL21A1Q96P44 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.66■□□□□ 0.1
COL21A1Q96P44 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.66■□□□□ 0.1
COL21A1Q96P44 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.66■□□□□ 0.1
COL21A1Q96P44 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
COL21A1Q96P44 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.66■□□□□ 0.1
COL21A1Q96P44 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.66■□□□□ 0.1
COL21A1Q96P44 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.66■□□□□ 0.1
COL21A1Q96P44 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.66■□□□□ 0.1
COL21A1Q96P44 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.66■□□□□ 0.1
COL21A1Q96P44 AC013467.2-201ENST00000605472 835 ntBASIC15.66■□□□□ 0.1
COL21A1Q96P44 AC010654.1-201ENST00000615722 808 ntBASIC15.66■□□□□ 0.1
COL21A1Q96P44 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.66■□□□□ 0.1
COL21A1Q96P44 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.66■□□□□ 0.1
COL21A1Q96P44 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL21A1Q96P44 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 AC002310.6-201ENST00000624451 1377 ntBASIC15.65■□□□□ 0.1
COL21A1Q96P44 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 AC005052.1-201ENST00000625181 2492 ntBASIC15.65■□□□□ 0.1
COL21A1Q96P44 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 SLC25A6P2-201ENST00000497974 877 ntBASIC15.65■□□□□ 0.1
COL21A1Q96P44 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 SLC25A1P1-201ENST00000528351 927 ntBASIC15.65■□□□□ 0.1
COL21A1Q96P44 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.65■□□□□ 0.1
COL21A1Q96P44 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL21A1Q96P44 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL21A1Q96P44 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL21A1Q96P44 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms