Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 AL355306.1-201ENST00000415580 579 ntBASIC16■□□□□ 0.15
CLIP3Q96DZ5 HCG4-201ENST00000418983 998 ntBASIC16■□□□□ 0.15
CLIP3Q96DZ5 TSEN15P1-201ENST00000423257 515 ntBASIC16■□□□□ 0.15
CLIP3Q96DZ5 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 AC022145.2-201ENST00000598203 171 ntBASIC16■□□□□ 0.15
CLIP3Q96DZ5 AL355385.1-201ENST00000606123 409 ntBASIC16■□□□□ 0.15
CLIP3Q96DZ5 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 AP001350.2-201ENST00000625104 1094 ntBASIC16■□□□□ 0.15
CLIP3Q96DZ5 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 AC108860.2-201ENST00000562760 2183 ntBASIC16■□□□□ 0.15
CLIP3Q96DZ5 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CLIP3Q96DZ5 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16■□□□□ 0.15
CLIP3Q96DZ5 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 AL121761.2-201ENST00000598007 1648 ntBASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 AL645939.2-201ENST00000427340 991 ntBASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 AL161645.1-201ENST00000622716 1255 ntBASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CLIP3Q96DZ5 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLIP3Q96DZ5 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.98■□□□□ 0.15
CLIP3Q96DZ5 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CLIP3Q96DZ5 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLIP3Q96DZ5 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLIP3Q96DZ5 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CLIP3Q96DZ5 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
CLIP3Q96DZ5 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC15.98■□□□□ 0.15
CLIP3Q96DZ5 AL645608.8-201ENST00000606034 2086 ntBASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms