Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 LYSMD4-203ENST00000378904 2122 ntBASIC16.42■□□□□ 0.22
TTC28Q96AY4 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 AC008132.1-202ENST00000342005 1389 ntBASIC16.42■□□□□ 0.22
TTC28Q96AY4 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 AC007274.2-201ENST00000421675 662 ntBASIC16.42■□□□□ 0.22
TTC28Q96AY4 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 CENPX-208ENST00000584347 799 ntTSL 2 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TTC28Q96AY4 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
TTC28Q96AY4 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC16.41■□□□□ 0.22
TTC28Q96AY4 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.41■□□□□ 0.22
TTC28Q96AY4 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 AL589702.1-201ENST00000641229 1509 ntBASIC16.41■□□□□ 0.22
TTC28Q96AY4 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC16.41■□□□□ 0.22
TTC28Q96AY4 CEP164P1-201ENST00000455142 418 ntBASIC16.41■□□□□ 0.22
TTC28Q96AY4 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC16.41■□□□□ 0.22
TTC28Q96AY4 GMFG-209ENST00000600322 622 ntTSL 5 BASIC16.41■□□□□ 0.22
TTC28Q96AY4 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC16.41■□□□□ 0.22
TTC28Q96AY4 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
TTC28Q96AY4 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC16.41■□□□□ 0.22
TTC28Q96AY4 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
TTC28Q96AY4 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
TTC28Q96AY4 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC16.41■□□□□ 0.22
TTC28Q96AY4 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC16.41■□□□□ 0.22
TTC28Q96AY4 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC16.41■□□□□ 0.22
TTC28Q96AY4 AC127024.7-201ENST00000625101 200 ntBASIC16.41■□□□□ 0.22
TTC28Q96AY4 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.41■□□□□ 0.22
TTC28Q96AY4 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.41■□□□□ 0.22
TTC28Q96AY4 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
TTC28Q96AY4 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
TTC28Q96AY4 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TTC28Q96AY4 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.4■□□□□ 0.22
TTC28Q96AY4 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TTC28Q96AY4 NOC2LP1-201ENST00000450578 752 ntBASIC16.4■□□□□ 0.22
TTC28Q96AY4 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC16.4■□□□□ 0.22
TTC28Q96AY4 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TTC28Q96AY4 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC16.4■□□□□ 0.22
TTC28Q96AY4 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC16.4■□□□□ 0.22
TTC28Q96AY4 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.4■□□□□ 0.22
TTC28Q96AY4 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
TTC28Q96AY4 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.4■□□□□ 0.22
TTC28Q96AY4 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TTC28Q96AY4 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TTC28Q96AY4 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.4■□□□□ 0.22
TTC28Q96AY4 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC16.4■□□□□ 0.22
TTC28Q96AY4 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TTC28Q96AY4 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
TTC28Q96AY4 NAGK-204ENST00000443872 878 ntTSL 3 BASIC16.4■□□□□ 0.22
TTC28Q96AY4 DDX39AP1-201ENST00000445147 1181 ntBASIC16.4■□□□□ 0.22
TTC28Q96AY4 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC16.4■□□□□ 0.22
TTC28Q96AY4 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.4■□□□□ 0.22
TTC28Q96AY4 AC007663.3-201ENST00000609632 465 ntBASIC16.4■□□□□ 0.22
TTC28Q96AY4 AC100757.4-201ENST00000626934 759 ntBASIC16.4■□□□□ 0.22
TTC28Q96AY4 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TTC28Q96AY4 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TTC28Q96AY4 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TTC28Q96AY4 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TTC28Q96AY4 TUBBP5-203ENST00000508529 1334 ntBASIC16.39■□□□□ 0.21
TTC28Q96AY4 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TTC28Q96AY4 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
TTC28Q96AY4 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TTC28Q96AY4 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TTC28Q96AY4 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TTC28Q96AY4 AL139010.1-201ENST00000454878 894 ntBASIC16.39■□□□□ 0.21
TTC28Q96AY4 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms