Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF549Q6P9A3 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF549Q6P9A3 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF549Q6P9A3 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ZNF549Q6P9A3 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
ZNF549Q6P9A3 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 REXO1L8P-201ENST00000604378 1897 ntBASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 RPL13AP23-201ENST00000480739 586 ntBASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 AC020765.3-201ENST00000613051 740 ntBASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 IL9RP2-201ENST00000423948 1312 ntBASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.4■□□□□ 0.22
ZNF549Q6P9A3 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
ZNF549Q6P9A3 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 AC006449.6-201ENST00000612330 2296 ntBASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 POU5F1P6-201ENST00000466990 990 ntBASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 AC018845.2-201ENST00000568326 409 ntBASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF549Q6P9A3 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.38■□□□□ 0.21
ZNF549Q6P9A3 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF549Q6P9A3 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF549Q6P9A3 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF549Q6P9A3 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
ZNF549Q6P9A3 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF549Q6P9A3 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF549Q6P9A3 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF549Q6P9A3 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms