Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC58Q4VC31 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC58Q4VC31 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC58Q4VC31 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC58Q4VC31 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC58Q4VC31 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC58Q4VC31 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 INTS4P1-201ENST00000438455 1935 ntBASIC14.84□□□□□ -0.03
CCDC58Q4VC31 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 SPDYE21P-201ENST00000413323 827 ntBASIC14.84□□□□□ -0.03
CCDC58Q4VC31 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 LINC01238-205ENST00000567549 1107 ntBASIC14.84□□□□□ -0.03
CCDC58Q4VC31 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC14.84□□□□□ -0.03
CCDC58Q4VC31 AC015656.1-201ENST00000624209 3578 ntBASIC14.84□□□□□ -0.03
CCDC58Q4VC31 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 AC148477.5-201ENST00000625164 1645 ntBASIC14.84□□□□□ -0.03
CCDC58Q4VC31 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CCDC58Q4VC31 AC097637.2-201ENST00000624096 1997 ntBASIC14.84□□□□□ -0.03
CCDC58Q4VC31 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.83□□□□□ -0.03
CCDC58Q4VC31 SIGLEC16-201ENST00000599858 1437 ntBASIC14.83□□□□□ -0.03
CCDC58Q4VC31 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
CCDC58Q4VC31 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC58Q4VC31 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CCDC58Q4VC31 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.83□□□□□ -0.03
CCDC58Q4VC31 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 AL136038.3-201ENST00000561909 1096 ntBASIC14.83□□□□□ -0.04
CCDC58Q4VC31 AP000867.4-201ENST00000641616 219 ntBASIC14.83□□□□□ -0.04
CCDC58Q4VC31 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC58Q4VC31 AC139749.1-202ENST00000617529 3139 ntBASIC14.83□□□□□ -0.04
CCDC58Q4VC31 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC58Q4VC31 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC58Q4VC31 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC58Q4VC31 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms