Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.79□□□□□ -0.04
SCN1BQ07699 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
SCN1BQ07699 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
SCN1BQ07699 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC14.79□□□□□ -0.04
SCN1BQ07699 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC14.79□□□□□ -0.04
SCN1BQ07699 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 PON3-205ENST00000451904 1053 ntTSL 3 BASIC14.79□□□□□ -0.04
SCN1BQ07699 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC14.79□□□□□ -0.04
SCN1BQ07699 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC14.79□□□□□ -0.04
SCN1BQ07699 IGHV3-52-201ENST00000519770 353 ntBASIC14.79□□□□□ -0.04
SCN1BQ07699 AC109462.3-201ENST00000573934 613 ntBASIC14.79□□□□□ -0.04
SCN1BQ07699 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC14.79□□□□□ -0.04
SCN1BQ07699 AC097376.2-205ENST00000610159 5334 ntBASIC14.79□□□□□ -0.04
SCN1BQ07699 VPS72-207ENST00000640458 689 ntTSL 5 BASIC14.79□□□□□ -0.04
SCN1BQ07699 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
SCN1BQ07699 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SCN1BQ07699 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.79□□□□□ -0.04
SCN1BQ07699 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.79□□□□□ -0.04
SCN1BQ07699 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.78□□□□□ -0.04
SCN1BQ07699 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.78□□□□□ -0.04
SCN1BQ07699 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.78□□□□□ -0.04
SCN1BQ07699 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.78□□□□□ -0.04
SCN1BQ07699 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
SCN1BQ07699 PCDHA3-202ENST00000532566 4594 ntBASIC14.78□□□□□ -0.04
SCN1BQ07699 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 AC097374.2-201ENST00000618617 1306 ntBASIC14.78□□□□□ -0.04
SCN1BQ07699 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC14.78□□□□□ -0.04
SCN1BQ07699 COX5BP2-201ENST00000392354 334 ntBASIC14.78□□□□□ -0.04
SCN1BQ07699 AC007967.3-201ENST00000434308 558 ntBASIC14.78□□□□□ -0.04
SCN1BQ07699 BX276092.5-203ENST00000456199 560 ntBASIC14.78□□□□□ -0.04
SCN1BQ07699 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 AC002558.1-201ENST00000488906 803 ntBASIC14.78□□□□□ -0.04
SCN1BQ07699 KRT8P26-201ENST00000534154 1276 ntBASIC14.78□□□□□ -0.04
SCN1BQ07699 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC14.78□□□□□ -0.04
SCN1BQ07699 LTBR-211ENST00000543190 785 ntTSL 3 BASIC14.78□□□□□ -0.04
SCN1BQ07699 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC14.78□□□□□ -0.04
SCN1BQ07699 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC14.78□□□□□ -0.04
SCN1BQ07699 NTF6B-201ENST00000591913 560 ntBASIC14.78□□□□□ -0.04
SCN1BQ07699 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
SCN1BQ07699 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.78□□□□□ -0.04
SCN1BQ07699 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.78□□□□□ -0.04
SCN1BQ07699 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.78□□□□□ -0.04
SCN1BQ07699 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
SCN1BQ07699 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
SCN1BQ07699 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SCN1BQ07699 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SCN1BQ07699 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SCN1BQ07699 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SCN1BQ07699 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SCN1BQ07699 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
SCN1BQ07699 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SCN1BQ07699 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.77□□□□□ -0.04
SCN1BQ07699 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SCN1BQ07699 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
SCN1BQ07699 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.77□□□□□ -0.04
SCN1BQ07699 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SCN1BQ07699 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
SCN1BQ07699 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.77□□□□□ -0.04
SCN1BQ07699 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SCN1BQ07699 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SCN1BQ07699 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.77□□□□□ -0.04
SCN1BQ07699 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC14.77□□□□□ -0.04
SCN1BQ07699 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC14.77□□□□□ -0.04
SCN1BQ07699 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SCN1BQ07699 FXN-203ENST00000396366 922 ntTSL 2 BASIC14.77□□□□□ -0.05
SCN1BQ07699 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
SCN1BQ07699 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms