Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
RNF4P78317 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.29■□□□□ 0.04
RNF4P78317 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.29■□□□□ 0.04
RNF4P78317 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.29■□□□□ 0.04
RNF4P78317 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.29■□□□□ 0.04
RNF4P78317 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.29■□□□□ 0.04
RNF4P78317 KRT18P32-201ENST00000424695 1287 ntBASIC15.29■□□□□ 0.04
RNF4P78317 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
RNF4P78317 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
RNF4P78317 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.29■□□□□ 0.04
RNF4P78317 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.29■□□□□ 0.04
RNF4P78317 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.29■□□□□ 0.04
RNF4P78317 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.29■□□□□ 0.04
RNF4P78317 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.29■□□□□ 0.04
RNF4P78317 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.29■□□□□ 0.04
RNF4P78317 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.29■□□□□ 0.04
RNF4P78317 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.29■□□□□ 0.04
RNF4P78317 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.29■□□□□ 0.04
RNF4P78317 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.29■□□□□ 0.04
RNF4P78317 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 PCGF3-213ENST00000620529 1899 ntBASIC15.29■□□□□ 0.04
RNF4P78317 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNF4P78317 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.29■□□□□ 0.04
RNF4P78317 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
RNF4P78317 NKILA-202ENST00000614771 2598 ntBASIC15.29■□□□□ 0.04
RNF4P78317 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RNF4P78317 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNF4P78317 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RNF4P78317 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.28■□□□□ 0.04
RNF4P78317 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
RNF4P78317 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
RNF4P78317 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.28■□□□□ 0.04
RNF4P78317 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.28■□□□□ 0.04
RNF4P78317 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNF4P78317 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC15.28■□□□□ 0.04
RNF4P78317 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
RNF4P78317 KRT18P28-201ENST00000453838 1332 ntBASIC15.28■□□□□ 0.04
RNF4P78317 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNF4P78317 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNF4P78317 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNF4P78317 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNF4P78317 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
RNF4P78317 MIR346-201ENST00000362234 95 ntBASIC15.28■□□□□ 0.04
RNF4P78317 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.28■□□□□ 0.04
RNF4P78317 LBH-203ENST00000404397 543 ntTSL 4 BASIC15.28■□□□□ 0.04
RNF4P78317 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.28■□□□□ 0.04
RNF4P78317 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.28■□□□□ 0.04
RNF4P78317 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.28■□□□□ 0.04
RNF4P78317 AC105233.2-201ENST00000523697 349 ntBASIC15.28■□□□□ 0.04
RNF4P78317 AF228730.5-201ENST00000530288 346 ntBASIC15.28■□□□□ 0.04
RNF4P78317 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.28■□□□□ 0.04
RNF4P78317 AP000842.3-202ENST00000569238 1080 ntBASIC15.28■□□□□ 0.04
RNF4P78317 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.28■□□□□ 0.04
RNF4P78317 AC073389.1-201ENST00000595595 795 ntBASIC15.28■□□□□ 0.04
RNF4P78317 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.28■□□□□ 0.04
RNF4P78317 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.28■□□□□ 0.04
RNF4P78317 AC009093.7-201ENST00000623853 1223 ntBASIC15.28■□□□□ 0.04
RNF4P78317 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.28■□□□□ 0.04
RNF4P78317 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.28■□□□□ 0.04
RNF4P78317 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
RNF4P78317 AC084121.4-201ENST00000641598 221 ntBASIC15.28■□□□□ 0.04
RNF4P78317 AF228730.8-201ENST00000642140 221 ntBASIC15.28■□□□□ 0.04
RNF4P78317 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNF4P78317 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RNF4P78317 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RNF4P78317 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
RNF4P78317 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNF4P78317 PRORSD1P-202ENST00000563365 2154 ntBASIC15.28■□□□□ 0.04
RNF4P78317 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNF4P78317 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
RNF4P78317 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RNF4P78317 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RNF4P78317 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.27■□□□□ 0.04
RNF4P78317 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.27■□□□□ 0.04
RNF4P78317 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RNF4P78317 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RNF4P78317 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RNF4P78317 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RNF4P78317 AC092171.3-201ENST00000610122 2651 ntBASIC15.27■□□□□ 0.04
RNF4P78317 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
RNF4P78317 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.27■□□□□ 0.04
RNF4P78317 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RNF4P78317 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
RNF4P78317 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms