Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.21■□□□□ 0.02
CDH11P55287 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.21■□□□□ 0.02
CDH11P55287 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CDH11P55287 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
CDH11P55287 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.21■□□□□ 0.02
CDH11P55287 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CDH11P55287 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CDH11P55287 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH11P55287 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
CDH11P55287 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CDH11P55287 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH11P55287 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.2■□□□□ 0.02
CDH11P55287 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH11P55287 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH11P55287 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH11P55287 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CDH11P55287 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
CDH11P55287 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CDH11P55287 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.2■□□□□ 0.02
CDH11P55287 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
CDH11P55287 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH11P55287 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH11P55287 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH11P55287 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 AC092910.1-201ENST00000482027 1129 ntBASIC15.2■□□□□ 0.02
CDH11P55287 KRT18P58-201ENST00000527480 1120 ntBASIC15.2■□□□□ 0.02
CDH11P55287 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH11P55287 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.2■□□□□ 0.02
CDH11P55287 RNF151-202ENST00000569210 853 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH11P55287 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 AC116407.3-201ENST00000623905 1129 ntBASIC15.2■□□□□ 0.02
CDH11P55287 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.2■□□□□ 0.02
CDH11P55287 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.2■□□□□ 0.02
CDH11P55287 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 AC068587.6-202ENST00000641839 5619 ntBASIC15.2■□□□□ 0.02
CDH11P55287 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CDH11P55287 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.2■□□□□ 0.02
CDH11P55287 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
CDH11P55287 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CDH11P55287 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CDH11P55287 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CDH11P55287 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH11P55287 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH11P55287 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH11P55287 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH11P55287 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.19■□□□□ 0.02
CDH11P55287 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH11P55287 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH11P55287 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH11P55287 NORAD-201ENST00000565493 5339 ntBASIC15.19■□□□□ 0.02
CDH11P55287 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CDH11P55287 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH11P55287 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH11P55287 AC079776.2-201ENST00000641154 1609 ntBASIC15.19■□□□□ 0.02
CDH11P55287 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH11P55287 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CDH11P55287 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH11P55287 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.19■□□□□ 0.02
CDH11P55287 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
CDH11P55287 SIGLEC30P-201ENST00000455569 941 ntBASIC15.19■□□□□ 0.02
CDH11P55287 RPL13AP23-201ENST00000480739 586 ntBASIC15.19■□□□□ 0.02
CDH11P55287 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH11P55287 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH11P55287 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH11P55287 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.19■□□□□ 0.02
CDH11P55287 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH11P55287 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH11P55287 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.19■□□□□ 0.02
CDH11P55287 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CDH11P55287 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH11P55287 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH11P55287 ZNF259P1-201ENST00000407656 1365 ntBASIC15.19■□□□□ 0.02
CDH11P55287 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CDH11P55287 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.19■□□□□ 0.02
CDH11P55287 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CDH11P55287 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms