Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HTTP42858 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC18.21■□□□□ 0.51
HTTP42858 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HTTP42858 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HTTP42858 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HTTP42858 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HTTP42858 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HTTP42858 SCARNA20.5-201ENST00000516991 142 ntBASIC18.21■□□□□ 0.51
HTTP42858 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC18.21■□□□□ 0.51
HTTP42858 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
HTTP42858 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.21■□□□□ 0.51
HTTP42858 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
HTTP42858 AL645728.1-201ENST00000366221 2101 ntBASIC18.21■□□□□ 0.51
HTTP42858 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.21■□□□□ 0.51
HTTP42858 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
HTTP42858 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.5
HTTP42858 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.5
HTTP42858 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
HTTP42858 MPV17-204ENST00000399052 749 ntTSL 4 BASIC18.21■□□□□ 0.5
HTTP42858 AL591846.1-201ENST00000451736 433 ntBASIC18.21■□□□□ 0.5
HTTP42858 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
HTTP42858 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC18.21■□□□□ 0.5
HTTP42858 CLUHP6-201ENST00000580789 941 ntBASIC18.21■□□□□ 0.5
HTTP42858 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC18.21■□□□□ 0.5
HTTP42858 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
HTTP42858 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.2■□□□□ 0.5
HTTP42858 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HTTP42858 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
HTTP42858 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
HTTP42858 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HTTP42858 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
HTTP42858 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HTTP42858 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
HTTP42858 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC18.2■□□□□ 0.5
HTTP42858 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
HTTP42858 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
HTTP42858 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.2■□□□□ 0.5
HTTP42858 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HTTP42858 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
HTTP42858 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.2■□□□□ 0.5
HTTP42858 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HTTP42858 AL662890.1-201ENST00000396818 632 ntBASIC18.2■□□□□ 0.5
HTTP42858 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HTTP42858 ENPP7P5-201ENST00000541031 1031 ntBASIC18.2■□□□□ 0.5
HTTP42858 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC18.2■□□□□ 0.5
HTTP42858 BRI3BPP1-201ENST00000594224 787 ntBASIC18.2■□□□□ 0.5
HTTP42858 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC18.2■□□□□ 0.5
HTTP42858 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
HTTP42858 CROCCP2-202ENST00000412962 2773 ntBASIC18.2■□□□□ 0.5
HTTP42858 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HTTP42858 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HTTP42858 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HTTP42858 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
HTTP42858 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
HTTP42858 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.2■□□□□ 0.5
HTTP42858 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.2■□□□□ 0.5
HTTP42858 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
HTTP42858 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HTTP42858 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HTTP42858 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.19■□□□□ 0.5
HTTP42858 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.19■□□□□ 0.5
HTTP42858 AC104306.2-201ENST00000451877 341 ntBASIC18.19■□□□□ 0.5
HTTP42858 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC18.19■□□□□ 0.5
HTTP42858 AC079316.1-201ENST00000548397 411 ntBASIC18.19■□□□□ 0.5
HTTP42858 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC18.19■□□□□ 0.5
HTTP42858 AL022328.3-201ENST00000607943 679 ntBASIC18.19■□□□□ 0.5
HTTP42858 CYP4F24P-201ENST00000586049 1580 ntBASIC18.19■□□□□ 0.5
HTTP42858 AL138781.2-201ENST00000617896 1843 ntBASIC18.19■□□□□ 0.5
HTTP42858 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HTTP42858 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HTTP42858 AL512652.2-201ENST00000625156 1716 ntBASIC18.19■□□□□ 0.5
HTTP42858 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.19■□□□□ 0.5
HTTP42858 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HTTP42858 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC18.19■□□□□ 0.5
HTTP42858 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC18.19■□□□□ 0.5
HTTP42858 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HTTP42858 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HTTP42858 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
HTTP42858 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.19■□□□□ 0.5
HTTP42858 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC18.19■□□□□ 0.5
HTTP42858 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HTTP42858 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HTTP42858 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HTTP42858 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
HTTP42858 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HTTP42858 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HTTP42858 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HTTP42858 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HTTP42858 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HTTP42858 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC18.18■□□□□ 0.5
HTTP42858 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC18.18■□□□□ 0.5
HTTP42858 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HTTP42858 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HTTP42858 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
HTTP42858 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HTTP42858 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HTTP42858 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HTTP42858 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.18■□□□□ 0.5
HTTP42858 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC18.18■□□□□ 0.5
HTTP42858 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms