Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.59■□□□□ 0.09
SOX3P41225 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.59■□□□□ 0.09
SOX3P41225 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.59■□□□□ 0.09
SOX3P41225 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.59■□□□□ 0.09
SOX3P41225 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.59■□□□□ 0.09
SOX3P41225 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.59■□□□□ 0.09
SOX3P41225 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
SOX3P41225 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.59■□□□□ 0.09
SOX3P41225 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
SOX3P41225 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.59■□□□□ 0.09
SOX3P41225 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.59■□□□□ 0.09
SOX3P41225 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.59■□□□□ 0.09
SOX3P41225 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
SOX3P41225 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.59■□□□□ 0.09
SOX3P41225 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.59■□□□□ 0.09
SOX3P41225 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.59■□□□□ 0.09
SOX3P41225 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.59■□□□□ 0.09
SOX3P41225 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.59■□□□□ 0.09
SOX3P41225 AC055717.3-201ENST00000622967 595 ntBASIC15.59■□□□□ 0.09
SOX3P41225 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
SOX3P41225 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.59■□□□□ 0.09
SOX3P41225 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
SOX3P41225 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.59■□□□□ 0.09
SOX3P41225 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
SOX3P41225 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.59■□□□□ 0.09
SOX3P41225 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX3P41225 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
SOX3P41225 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.58■□□□□ 0.09
SOX3P41225 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
SOX3P41225 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.09
SOX3P41225 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
SOX3P41225 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
SOX3P41225 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
SOX3P41225 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
SOX3P41225 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
SOX3P41225 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
SOX3P41225 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.58■□□□□ 0.08
SOX3P41225 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
SOX3P41225 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SOX3P41225 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
SOX3P41225 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SOX3P41225 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SOX3P41225 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
SOX3P41225 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
SOX3P41225 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
SOX3P41225 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.58■□□□□ 0.08
SOX3P41225 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SOX3P41225 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.58■□□□□ 0.08
SOX3P41225 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.58■□□□□ 0.08
SOX3P41225 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.58■□□□□ 0.08
SOX3P41225 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.58■□□□□ 0.08
SOX3P41225 DUX4L17-201ENST00000557360 1267 ntBASIC15.58■□□□□ 0.08
SOX3P41225 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.58■□□□□ 0.08
SOX3P41225 AC005412.3-201ENST00000580309 715 ntBASIC15.58■□□□□ 0.08
SOX3P41225 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.58■□□□□ 0.08
SOX3P41225 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
SOX3P41225 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.58■□□□□ 0.08
SOX3P41225 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
SOX3P41225 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
SOX3P41225 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SOX3P41225 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SOX3P41225 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.58■□□□□ 0.08
SOX3P41225 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SOX3P41225 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
SOX3P41225 AL513523.2-202ENST00000427283 2040 ntBASIC15.58■□□□□ 0.08
SOX3P41225 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.58■□□□□ 0.08
SOX3P41225 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
SOX3P41225 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SOX3P41225 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SOX3P41225 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.58■□□□□ 0.08
SOX3P41225 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.58■□□□□ 0.08
SOX3P41225 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SOX3P41225 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SOX3P41225 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.57■□□□□ 0.08
SOX3P41225 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.57■□□□□ 0.08
SOX3P41225 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC15.57■□□□□ 0.08
SOX3P41225 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
SOX3P41225 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SOX3P41225 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SOX3P41225 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.57■□□□□ 0.08
SOX3P41225 AC092364.2-201ENST00000596710 2692 ntBASIC15.57■□□□□ 0.08
SOX3P41225 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms