Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
MSH3P20585 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
MSH3P20585 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.46■□□□□ 0.23
MSH3P20585 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSH3P20585 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
MSH3P20585 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSH3P20585 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSH3P20585 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.46■□□□□ 0.23
MSH3P20585 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
MSH3P20585 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.46■□□□□ 0.23
MSH3P20585 AC092474.2-201ENST00000424288 719 ntBASIC16.46■□□□□ 0.23
MSH3P20585 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.46■□□□□ 0.23
MSH3P20585 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.46■□□□□ 0.23
MSH3P20585 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSH3P20585 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.46■□□□□ 0.23
MSH3P20585 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSH3P20585 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.46■□□□□ 0.23
MSH3P20585 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.46■□□□□ 0.23
MSH3P20585 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
MSH3P20585 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.46■□□□□ 0.23
MSH3P20585 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.46■□□□□ 0.23
MSH3P20585 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSH3P20585 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.46■□□□□ 0.23
MSH3P20585 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSH3P20585 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.46■□□□□ 0.23
MSH3P20585 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
MSH3P20585 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
MSH3P20585 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
MSH3P20585 DOC2GP-204ENST00000639052 2548 ntBASIC16.46■□□□□ 0.22
MSH3P20585 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.46■□□□□ 0.22
MSH3P20585 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
MSH3P20585 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.45■□□□□ 0.22
MSH3P20585 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
MSH3P20585 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.45■□□□□ 0.22
MSH3P20585 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
MSH3P20585 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.45■□□□□ 0.22
MSH3P20585 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
MSH3P20585 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.45■□□□□ 0.22
MSH3P20585 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.45■□□□□ 0.22
MSH3P20585 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.45■□□□□ 0.22
MSH3P20585 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.45■□□□□ 0.22
MSH3P20585 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.45■□□□□ 0.22
MSH3P20585 AC010327.4-202ENST00000591484 748 ntBASIC16.45■□□□□ 0.22
MSH3P20585 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
MSH3P20585 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 AC046158.3-201ENST00000624947 2558 ntBASIC16.45■□□□□ 0.22
MSH3P20585 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
MSH3P20585 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.45■□□□□ 0.22
MSH3P20585 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
MSH3P20585 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.45■□□□□ 0.22
MSH3P20585 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.45■□□□□ 0.22
MSH3P20585 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.45■□□□□ 0.22
MSH3P20585 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.45■□□□□ 0.22
MSH3P20585 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.45■□□□□ 0.22
MSH3P20585 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSH3P20585 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MSH3P20585 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MSH3P20585 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
MSH3P20585 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSH3P20585 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.44■□□□□ 0.22
MSH3P20585 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
MSH3P20585 AL031731.1-201ENST00000642131 2094 ntBASIC16.44■□□□□ 0.22
MSH3P20585 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
MSH3P20585 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
MSH3P20585 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSH3P20585 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSH3P20585 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MSH3P20585 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
MSH3P20585 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.44■□□□□ 0.22
MSH3P20585 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.44■□□□□ 0.22
MSH3P20585 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
MSH3P20585 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSH3P20585 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.44■□□□□ 0.22
MSH3P20585 HTR5BP-201ENST00000430851 1154 ntBASIC16.44■□□□□ 0.22
MSH3P20585 MKNK2P1-201ENST00000437526 628 ntBASIC16.44■□□□□ 0.22
MSH3P20585 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSH3P20585 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.44■□□□□ 0.22
MSH3P20585 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSH3P20585 AC005829.1-201ENST00000570002 483 ntBASIC16.44■□□□□ 0.22
MSH3P20585 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.44■□□□□ 0.22
MSH3P20585 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSH3P20585 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
MSH3P20585 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 132.7 ms