Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
COL6A2P12110 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A2P12110 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A2P12110 AKR1C7P-201ENST00000305623 895 ntBASIC16.36■□□□□ 0.21
COL6A2P12110 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A2P12110 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A2P12110 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.36■□□□□ 0.21
COL6A2P12110 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A2P12110 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A2P12110 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.36■□□□□ 0.21
COL6A2P12110 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.36■□□□□ 0.21
COL6A2P12110 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A2P12110 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.36■□□□□ 0.21
COL6A2P12110 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.36■□□□□ 0.21
COL6A2P12110 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.36■□□□□ 0.21
COL6A2P12110 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.36■□□□□ 0.21
COL6A2P12110 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.36■□□□□ 0.21
COL6A2P12110 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.36■□□□□ 0.21
COL6A2P12110 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.36■□□□□ 0.21
COL6A2P12110 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.36■□□□□ 0.21
COL6A2P12110 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.36■□□□□ 0.21
COL6A2P12110 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
COL6A2P12110 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A2P12110 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A2P12110 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.36■□□□□ 0.21
COL6A2P12110 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A2P12110 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A2P12110 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
COL6A2P12110 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.36■□□□□ 0.21
COL6A2P12110 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A2P12110 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.36■□□□□ 0.21
COL6A2P12110 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
COL6A2P12110 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
COL6A2P12110 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A2P12110 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.35■□□□□ 0.21
COL6A2P12110 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.35■□□□□ 0.21
COL6A2P12110 LINC02228-204ENST00000642115 2962 ntBASIC16.35■□□□□ 0.21
COL6A2P12110 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
COL6A2P12110 AL592424.1-201ENST00000563624 1536 ntBASIC16.35■□□□□ 0.21
COL6A2P12110 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A2P12110 AC010491.1-201ENST00000563101 2797 ntBASIC16.35■□□□□ 0.21
COL6A2P12110 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A2P12110 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.35■□□□□ 0.21
COL6A2P12110 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A2P12110 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A2P12110 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A2P12110 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.35■□□□□ 0.21
COL6A2P12110 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A2P12110 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A2P12110 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.35■□□□□ 0.21
COL6A2P12110 IGHV3-65-201ENST00000523210 341 ntBASIC16.35■□□□□ 0.21
COL6A2P12110 AF238378.1-201ENST00000526806 358 ntBASIC16.35■□□□□ 0.21
COL6A2P12110 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.35■□□□□ 0.21
COL6A2P12110 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.35■□□□□ 0.21
COL6A2P12110 PGM5P2-202ENST00000637225 1043 ntBASIC16.35■□□□□ 0.21
COL6A2P12110 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.35■□□□□ 0.21
COL6A2P12110 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A2P12110 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.35■□□□□ 0.21
COL6A2P12110 CDC14C-201ENST00000428251 1719 ntBASIC16.35■□□□□ 0.21
COL6A2P12110 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.35■□□□□ 0.21
COL6A2P12110 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A2P12110 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A2P12110 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A2P12110 AC112504.1-201ENST00000623415 1841 ntBASIC16.35■□□□□ 0.21
COL6A2P12110 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.35■□□□□ 0.21
COL6A2P12110 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A2P12110 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A2P12110 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A2P12110 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.35■□□□□ 0.21
COL6A2P12110 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.35■□□□□ 0.21
COL6A2P12110 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.35■□□□□ 0.21
COL6A2P12110 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A2P12110 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A2P12110 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.35■□□□□ 0.21
COL6A2P12110 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A2P12110 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A2P12110 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.34■□□□□ 0.21
COL6A2P12110 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A2P12110 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A2P12110 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A2P12110 DUSP5P1-201ENST00000441325 1139 ntBASIC16.34■□□□□ 0.21
COL6A2P12110 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A2P12110 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.34■□□□□ 0.21
COL6A2P12110 OR7E14P-202ENST00000530490 1290 ntBASIC16.34■□□□□ 0.21
COL6A2P12110 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A2P12110 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.34■□□□□ 0.21
COL6A2P12110 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A2P12110 PRELID1P1-202ENST00000567272 903 ntBASIC16.34■□□□□ 0.21
COL6A2P12110 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A2P12110 AP005117.1-202ENST00000581724 1908 ntBASIC16.34■□□□□ 0.21
COL6A2P12110 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A2P12110 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A2P12110 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.34■□□□□ 0.21
COL6A2P12110 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.34■□□□□ 0.21
COL6A2P12110 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A2P12110 LINC02447-202ENST00000501888 2146 ntBASIC16.34■□□□□ 0.21
COL6A2P12110 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.34■□□□□ 0.21
COL6A2P12110 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A2P12110 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.34■□□□□ 0.21
COL6A2P12110 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms