Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LDLRP01130 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDLRP01130 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDLRP01130 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
LDLRP01130 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LDLRP01130 MTCL1P1-201ENST00000446207 792 ntBASIC16.04■□□□□ 0.16
LDLRP01130 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.04■□□□□ 0.16
LDLRP01130 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.04■□□□□ 0.16
LDLRP01130 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.04■□□□□ 0.16
LDLRP01130 RFPL4AP1-201ENST00000530883 850 ntBASIC16.04■□□□□ 0.16
LDLRP01130 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.04■□□□□ 0.16
LDLRP01130 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDLRP01130 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.04■□□□□ 0.16
LDLRP01130 AC105339.3-201ENST00000560043 636 ntBASIC16.04■□□□□ 0.16
LDLRP01130 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.04■□□□□ 0.16
LDLRP01130 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.04■□□□□ 0.16
LDLRP01130 AC011467.2-201ENST00000598425 242 ntBASIC16.04■□□□□ 0.16
LDLRP01130 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.04■□□□□ 0.16
LDLRP01130 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDLRP01130 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
LDLRP01130 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDLRP01130 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LDLRP01130 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.04■□□□□ 0.16
LDLRP01130 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDLRP01130 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LDLRP01130 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.04■□□□□ 0.16
LDLRP01130 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDLRP01130 ALOX12P2-203ENST00000570921 1945 ntBASIC16.04■□□□□ 0.16
LDLRP01130 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.03■□□□□ 0.16
LDLRP01130 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
LDLRP01130 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.03■□□□□ 0.16
LDLRP01130 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.03■□□□□ 0.16
LDLRP01130 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.03■□□□□ 0.16
LDLRP01130 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.03■□□□□ 0.16
LDLRP01130 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.03■□□□□ 0.16
LDLRP01130 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 AC023274.1-201ENST00000418278 595 ntBASIC16.03■□□□□ 0.16
LDLRP01130 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.03■□□□□ 0.16
LDLRP01130 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.03■□□□□ 0.16
LDLRP01130 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
LDLRP01130 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.03■□□□□ 0.16
LDLRP01130 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 AL596442.2-201ENST00000610240 980 ntBASIC16.03■□□□□ 0.16
LDLRP01130 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
LDLRP01130 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
LDLRP01130 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.03■□□□□ 0.16
LDLRP01130 FRMD8P1-201ENST00000440433 1524 ntBASIC16.03■□□□□ 0.16
LDLRP01130 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
LDLRP01130 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.03■□□□□ 0.16
LDLRP01130 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.03■□□□□ 0.16
LDLRP01130 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LDLRP01130 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.03■□□□□ 0.16
LDLRP01130 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDLRP01130 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LDLRP01130 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDLRP01130 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDLRP01130 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
LDLRP01130 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDLRP01130 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
LDLRP01130 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDLRP01130 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.02■□□□□ 0.16
LDLRP01130 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDLRP01130 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
LDLRP01130 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
LDLRP01130 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDLRP01130 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDLRP01130 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
LDLRP01130 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.16
LDLRP01130 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.02■□□□□ 0.16
LDLRP01130 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.02■□□□□ 0.16
LDLRP01130 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
LDLRP01130 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.02■□□□□ 0.16
LDLRP01130 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.02■□□□□ 0.16
LDLRP01130 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LDLRP01130 AC068472.1-201ENST00000474589 881 ntBASIC16.02■□□□□ 0.16
LDLRP01130 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.02■□□□□ 0.16
LDLRP01130 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
LDLRP01130 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.02■□□□□ 0.16
LDLRP01130 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.02■□□□□ 0.16
LDLRP01130 AC109462.3-201ENST00000573934 613 ntBASIC16.02■□□□□ 0.16
LDLRP01130 AL138831.2-201ENST00000606564 490 ntBASIC16.02■□□□□ 0.16
LDLRP01130 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms