Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.92■□□□□ 0.46
RNF40O75150 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF40O75150 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF40O75150 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.92■□□□□ 0.46
RNF40O75150 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
RNF40O75150 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RNF40O75150 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.92■□□□□ 0.46
RNF40O75150 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
RNF40O75150 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RNF40O75150 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RNF40O75150 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.91■□□□□ 0.46
RNF40O75150 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
RNF40O75150 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
RNF40O75150 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.91■□□□□ 0.46
RNF40O75150 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
RNF40O75150 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.91■□□□□ 0.46
RNF40O75150 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.91■□□□□ 0.46
RNF40O75150 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.91■□□□□ 0.46
RNF40O75150 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.91■□□□□ 0.46
RNF40O75150 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.91■□□□□ 0.46
RNF40O75150 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.91■□□□□ 0.46
RNF40O75150 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.91■□□□□ 0.46
RNF40O75150 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.91■□□□□ 0.46
RNF40O75150 AC004706.3-202ENST00000621574 984 ntBASIC17.91■□□□□ 0.46
RNF40O75150 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.91■□□□□ 0.46
RNF40O75150 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.91■□□□□ 0.46
RNF40O75150 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 AC006504.4-201ENST00000592118 1568 ntBASIC17.91■□□□□ 0.46
RNF40O75150 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.91■□□□□ 0.46
RNF40O75150 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.91■□□□□ 0.46
RNF40O75150 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RNF40O75150 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
RNF40O75150 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.9■□□□□ 0.46
RNF40O75150 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.9■□□□□ 0.46
RNF40O75150 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.9■□□□□ 0.46
RNF40O75150 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.9■□□□□ 0.46
RNF40O75150 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.9■□□□□ 0.46
RNF40O75150 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.9■□□□□ 0.46
RNF40O75150 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC17.9■□□□□ 0.46
RNF40O75150 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 MCCD1P2-201ENST00000423228 335 ntBASIC17.9■□□□□ 0.46
RNF40O75150 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.9■□□□□ 0.46
RNF40O75150 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.9■□□□□ 0.46
RNF40O75150 AL596442.2-201ENST00000610240 980 ntBASIC17.9■□□□□ 0.46
RNF40O75150 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.9■□□□□ 0.46
RNF40O75150 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
RNF40O75150 LINC02228-204ENST00000642115 2962 ntBASIC17.9■□□□□ 0.46
RNF40O75150 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.9■□□□□ 0.46
RNF40O75150 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RNF40O75150 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
RNF40O75150 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
RNF40O75150 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
RNF40O75150 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.89■□□□□ 0.46
RNF40O75150 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
RNF40O75150 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
RNF40O75150 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.89■□□□□ 0.45
RNF40O75150 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RNF40O75150 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RNF40O75150 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
RNF40O75150 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RNF40O75150 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RNF40O75150 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
RNF40O75150 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RNF40O75150 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.89■□□□□ 0.45
RNF40O75150 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RNF40O75150 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
RNF40O75150 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms