Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 AC117500.6-201ENST00000624871 588 ntBASIC13.42□□□□□ -0.26
FOXA2Q9Y261 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 AL031731.1-201ENST00000642131 2094 ntBASIC13.42□□□□□ -0.26
FOXA2Q9Y261 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 BLK-205ENST00000529894 2017 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 AL139384.1-201ENST00000612143 3047 ntBASIC13.42□□□□□ -0.26
FOXA2Q9Y261 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 PC-214ENST00000628663 1470 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA2Q9Y261 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 CSF3-203ENST00000394148 622 ntTSL 3 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 METTL26-205ENST00000397666 726 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 REXO1L3P-201ENST00000622202 1288 ntBASIC13.41□□□□□ -0.26
FOXA2Q9Y261 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC13.41□□□□□ -0.26
FOXA2Q9Y261 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 AC131009.4-201ENST00000624048 1740 ntBASIC13.4□□□□□ -0.26
FOXA2Q9Y261 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 AC006449.6-201ENST00000612330 2296 ntBASIC13.4□□□□□ -0.26
FOXA2Q9Y261 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC13.4□□□□□ -0.26
FOXA2Q9Y261 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms