Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
PAAF1Q9BRP4 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PAAF1Q9BRP4 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PAAF1Q9BRP4 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PAAF1Q9BRP4 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PAAF1Q9BRP4 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.52■□□□□ 0.4
PAAF1Q9BRP4 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PAAF1Q9BRP4 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.52■□□□□ 0.4
PAAF1Q9BRP4 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.52■□□□□ 0.4
PAAF1Q9BRP4 AC190387.1-201ENST00000551683 408 ntBASIC17.52■□□□□ 0.4
PAAF1Q9BRP4 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.52■□□□□ 0.4
PAAF1Q9BRP4 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PAAF1Q9BRP4 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.52■□□□□ 0.4
PAAF1Q9BRP4 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
PAAF1Q9BRP4 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
PAAF1Q9BRP4 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PAAF1Q9BRP4 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PAAF1Q9BRP4 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.52■□□□□ 0.39
PAAF1Q9BRP4 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PAAF1Q9BRP4 AC005622.1-201ENST00000636801 1703 ntBASIC17.52■□□□□ 0.39
PAAF1Q9BRP4 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
PAAF1Q9BRP4 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.52■□□□□ 0.39
PAAF1Q9BRP4 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
PAAF1Q9BRP4 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 AC087499.5-201ENST00000452760 1342 ntBASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.51■□□□□ 0.39
PAAF1Q9BRP4 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 COQ9-214ENST00000567933 882 ntTSL 3 BASIC17.5■□□□□ 0.39
PAAF1Q9BRP4 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms