Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 AC026979.3-201ENST00000607315 403 ntBASIC25.54■■□□□ 1.68
VPS8Q8N3P4 AL589739.1-201ENST00000607720 493 ntBASIC25.54■■□□□ 1.68
VPS8Q8N3P4 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 RPS19-201ENST00000221975 500 ntTSL 3 BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 BASP1P1-201ENST00000430708 665 ntBASIC25.54■■□□□ 1.68
VPS8Q8N3P4 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 TMPRSS11CP-201ENST00000453277 683 ntBASIC25.54■■□□□ 1.68
VPS8Q8N3P4 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC25.54■■□□□ 1.68
VPS8Q8N3P4 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 PCDHA14-201ENST00000506751 2298 ntBASIC25.53■■□□□ 1.68
VPS8Q8N3P4 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 CENPM-206ENST00000407253 818 ntTSL 2 BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 AC027369.6-201ENST00000525520 931 ntBASIC25.53■■□□□ 1.68
VPS8Q8N3P4 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC25.53■■□□□ 1.68
VPS8Q8N3P4 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 AL139010.1-201ENST00000454878 894 ntBASIC25.52■■□□□ 1.68
VPS8Q8N3P4 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 PRR29-209ENST00000582540 967 ntTSL 2 BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 AC004790.1-201ENST00000612686 536 ntBASIC25.52■■□□□ 1.68
VPS8Q8N3P4 RAB34-223ENST00000636154 730 ntTSL 2 BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VPS8Q8N3P4 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC25.51■■□□□ 1.68
VPS8Q8N3P4 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 HIST3H2BA-201ENST00000436555 524 ntBASIC25.51■■□□□ 1.67
VPS8Q8N3P4 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC25.51■■□□□ 1.67
VPS8Q8N3P4 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC25.5■■□□□ 1.67
VPS8Q8N3P4 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC25.5■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms