Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC20.52■□□□□ 0.87
UBE3BQ7Z3V4 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 RAC2-204ENST00000406508 893 ntTSL 5 BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 AC241585.1-201ENST00000433527 519 ntBASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 GREM1-201ENST00000560677 623 ntTSL 4 BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 AC105021.1-202ENST00000570572 669 ntBASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 LITAF-210ENST00000571976 548 ntTSL 2 BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 LITAF-214ENST00000574703 486 ntTSL 2 BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
UBE3BQ7Z3V4 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 KLK8-202ENST00000320838 456 ntTSL 5 BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 TSSK5P-201ENST00000423978 907 ntBASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 HNRNPA1P40-201ENST00000426371 1278 ntBASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 AC004890.2-204ENST00000481968 304 ntBASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 RN7SL828P-201ENST00000607615 303 ntBASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 GPER1-207ENST00000619052 571 ntTSL 2 BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 AL590560.3-201ENST00000623350 461 ntBASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 FLJ38576-201ENST00000623820 2459 ntBASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC20.5■□□□□ 0.87
UBE3BQ7Z3V4 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 AL035456.1-201ENST00000456064 1369 ntBASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 GRAMD4P3-201ENST00000621665 1669 ntBASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 AC236430.1-201ENST00000402231 743 ntBASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 TSPY16P-201ENST00000449843 468 ntBASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 AL512638.1-201ENST00000457493 794 ntBASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 AC061975.2-201ENST00000581722 295 ntBASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
UBE3BQ7Z3V4 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms