Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.19■□□□□ 0.18
PTCHD3Q3KNS1 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 HMGA1P7-201ENST00000406908 502 ntBASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 AC007064.4-201ENST00000637740 555 ntBASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 GPAA1P2-202ENST00000606848 1787 ntBASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
PTCHD3Q3KNS1 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 AL645728.2-201ENST00000641974 660 ntBASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PTCHD3Q3KNS1 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms