Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COPAP53621 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COPAP53621 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COPAP53621 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.09■□□□□ 0.33
COPAP53621 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.09■□□□□ 0.33
COPAP53621 AC004449.1-201ENST00000564240 433 ntBASIC17.09■□□□□ 0.33
COPAP53621 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.09■□□□□ 0.33
COPAP53621 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.09■□□□□ 0.33
COPAP53621 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.09■□□□□ 0.33
COPAP53621 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COPAP53621 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COPAP53621 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COPAP53621 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COPAP53621 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.09■□□□□ 0.33
COPAP53621 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COPAP53621 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
COPAP53621 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.09■□□□□ 0.33
COPAP53621 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.09■□□□□ 0.33
COPAP53621 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.09■□□□□ 0.33
COPAP53621 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COPAP53621 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.09■□□□□ 0.33
COPAP53621 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COPAP53621 PCDHA1-201ENST00000378133 2726 ntBASIC17.09■□□□□ 0.33
COPAP53621 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
COPAP53621 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
COPAP53621 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COPAP53621 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.09■□□□□ 0.33
COPAP53621 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
COPAP53621 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
COPAP53621 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COPAP53621 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
COPAP53621 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
COPAP53621 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.08■□□□□ 0.33
COPAP53621 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COPAP53621 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.08■□□□□ 0.33
COPAP53621 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COPAP53621 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COPAP53621 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
COPAP53621 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COPAP53621 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
COPAP53621 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COPAP53621 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.08■□□□□ 0.32
COPAP53621 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.08■□□□□ 0.32
COPAP53621 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COPAP53621 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
COPAP53621 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COPAP53621 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
COPAP53621 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COPAP53621 SLC25A1P3-201ENST00000395415 828 ntBASIC17.08■□□□□ 0.32
COPAP53621 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.08■□□□□ 0.32
COPAP53621 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.08■□□□□ 0.32
COPAP53621 AL627223.1-201ENST00000416693 442 ntBASIC17.08■□□□□ 0.32
COPAP53621 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.08■□□□□ 0.32
COPAP53621 FAM86C2P-203ENST00000528684 1004 ntBASIC17.08■□□□□ 0.32
COPAP53621 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.08■□□□□ 0.32
COPAP53621 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.08■□□□□ 0.32
COPAP53621 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.08■□□□□ 0.32
COPAP53621 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
COPAP53621 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COPAP53621 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
COPAP53621 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
COPAP53621 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COPAP53621 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COPAP53621 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.08■□□□□ 0.32
COPAP53621 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COPAP53621 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
COPAP53621 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COPAP53621 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COPAP53621 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COPAP53621 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.07■□□□□ 0.32
COPAP53621 AC116353.5-201ENST00000638148 1699 ntBASIC17.07■□□□□ 0.32
COPAP53621 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.07■□□□□ 0.32
COPAP53621 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COPAP53621 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COPAP53621 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COPAP53621 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COPAP53621 EGFEM1P-202ENST00000431685 1563 ntBASIC17.07■□□□□ 0.32
COPAP53621 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COPAP53621 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COPAP53621 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.07■□□□□ 0.32
COPAP53621 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.07■□□□□ 0.32
COPAP53621 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
COPAP53621 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.07■□□□□ 0.32
COPAP53621 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.07■□□□□ 0.32
COPAP53621 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.07■□□□□ 0.32
COPAP53621 SPDYE11-202ENST00000450699 704 ntBASIC17.07■□□□□ 0.32
COPAP53621 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
COPAP53621 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.07■□□□□ 0.32
COPAP53621 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.07■□□□□ 0.32
COPAP53621 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.07■□□□□ 0.32
COPAP53621 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.07■□□□□ 0.32
COPAP53621 SPDYE9P-201ENST00000570642 692 ntBASIC17.07■□□□□ 0.32
COPAP53621 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.07■□□□□ 0.32
COPAP53621 SPDYE10P-202ENST00000612005 668 ntBASIC17.07■□□□□ 0.32
COPAP53621 SPDYE8P-202ENST00000612377 668 ntBASIC17.07■□□□□ 0.32
COPAP53621 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
COPAP53621 AC009093.7-201ENST00000623853 1223 ntBASIC17.07■□□□□ 0.32
COPAP53621 LINC00628-201ENST00000628516 1289 ntBASIC17.07■□□□□ 0.32
COPAP53621 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COPAP53621 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms