Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
LIG3P49916 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.49■□□□□ 0.39
LIG3P49916 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.49■□□□□ 0.39
LIG3P49916 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.49■□□□□ 0.39
LIG3P49916 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.49■□□□□ 0.39
LIG3P49916 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.49■□□□□ 0.39
LIG3P49916 MIR7706-201ENST00000613747 67 ntBASIC17.49■□□□□ 0.39
LIG3P49916 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.49■□□□□ 0.39
LIG3P49916 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
LIG3P49916 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.49■□□□□ 0.39
LIG3P49916 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.49■□□□□ 0.39
LIG3P49916 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC17.49■□□□□ 0.39
LIG3P49916 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
LIG3P49916 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIG3P49916 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
LIG3P49916 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
LIG3P49916 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.48■□□□□ 0.39
LIG3P49916 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.48■□□□□ 0.39
LIG3P49916 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
LIG3P49916 MYCLP1-201ENST00000372451 1075 ntBASIC17.48■□□□□ 0.39
LIG3P49916 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
LIG3P49916 AL590627.1-203ENST00000421194 1026 ntBASIC17.48■□□□□ 0.39
LIG3P49916 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.48■□□□□ 0.39
LIG3P49916 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
LIG3P49916 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.48■□□□□ 0.39
LIG3P49916 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.48■□□□□ 0.39
LIG3P49916 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.48■□□□□ 0.39
LIG3P49916 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.48■□□□□ 0.39
LIG3P49916 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 NFIC-211ENST00000641145 8399 ntBASIC17.48■□□□□ 0.39
LIG3P49916 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
LIG3P49916 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
LIG3P49916 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIG3P49916 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.47■□□□□ 0.39
LIG3P49916 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
LIG3P49916 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
LIG3P49916 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC17.47■□□□□ 0.39
LIG3P49916 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC17.47■□□□□ 0.39
LIG3P49916 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC17.47■□□□□ 0.39
LIG3P49916 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.47■□□□□ 0.39
LIG3P49916 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.47■□□□□ 0.39
LIG3P49916 SIGLEC30P-201ENST00000455569 941 ntBASIC17.47■□□□□ 0.39
LIG3P49916 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
LIG3P49916 AC139887.3-201ENST00000568585 713 ntBASIC17.47■□□□□ 0.39
LIG3P49916 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.47■□□□□ 0.39
LIG3P49916 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.47■□□□□ 0.39
LIG3P49916 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.47■□□□□ 0.39
LIG3P49916 AC107918.4-202ENST00000641623 219 ntBASIC17.47■□□□□ 0.39
LIG3P49916 AC243591.1-201ENST00000452967 1364 ntBASIC17.47■□□□□ 0.39
LIG3P49916 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
LIG3P49916 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
LIG3P49916 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.47■□□□□ 0.39
LIG3P49916 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIG3P49916 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms