Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.45■□□□□ 0.38
LHX1P48742 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LHX1P48742 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.45■□□□□ 0.38
LHX1P48742 AC005622.1-201ENST00000636801 1703 ntBASIC17.45■□□□□ 0.38
LHX1P48742 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.45■□□□□ 0.38
LHX1P48742 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX1P48742 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
LHX1P48742 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
LHX1P48742 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LHX1P48742 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
LHX1P48742 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.45■□□□□ 0.38
LHX1P48742 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.45■□□□□ 0.38
LHX1P48742 KLF2P3-201ENST00000451977 1087 ntBASIC17.45■□□□□ 0.38
LHX1P48742 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.45■□□□□ 0.38
LHX1P48742 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.45■□□□□ 0.38
LHX1P48742 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.45■□□□□ 0.38
LHX1P48742 AC024267.1-201ENST00000582320 895 ntBASIC17.45■□□□□ 0.38
LHX1P48742 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.45■□□□□ 0.38
LHX1P48742 AC093512.1-201ENST00000617969 520 ntBASIC17.45■□□□□ 0.38
LHX1P48742 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LHX1P48742 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC17.45■□□□□ 0.38
LHX1P48742 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LHX1P48742 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LHX1P48742 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LHX1P48742 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX1P48742 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
LHX1P48742 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LHX1P48742 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.45■□□□□ 0.38
LHX1P48742 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX1P48742 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX1P48742 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX1P48742 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX1P48742 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LHX1P48742 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.44■□□□□ 0.38
LHX1P48742 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
LHX1P48742 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
LHX1P48742 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LHX1P48742 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.44■□□□□ 0.38
LHX1P48742 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LHX1P48742 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
LHX1P48742 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
LHX1P48742 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LHX1P48742 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LHX1P48742 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.44■□□□□ 0.38
LHX1P48742 U82695.1-201ENST00000635752 1889 ntBASIC17.44■□□□□ 0.38
LHX1P48742 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
LHX1P48742 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LHX1P48742 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LHX1P48742 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LHX1P48742 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.44■□□□□ 0.38
LHX1P48742 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.44■□□□□ 0.38
LHX1P48742 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LHX1P48742 RNA5SP410-201ENST00000516285 106 ntBASIC17.44■□□□□ 0.38
LHX1P48742 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.44■□□□□ 0.38
LHX1P48742 MIR4453-201ENST00000584019 89 ntBASIC17.44■□□□□ 0.38
LHX1P48742 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LHX1P48742 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LHX1P48742 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.44■□□□□ 0.38
LHX1P48742 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LHX1P48742 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.44■□□□□ 0.38
LHX1P48742 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.44■□□□□ 0.38
LHX1P48742 FLJ38576-201ENST00000623820 2459 ntBASIC17.44■□□□□ 0.38
LHX1P48742 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.44■□□□□ 0.38
LHX1P48742 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.44■□□□□ 0.38
LHX1P48742 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LHX1P48742 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LHX1P48742 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LHX1P48742 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LHX1P48742 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LHX1P48742 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LHX1P48742 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.43■□□□□ 0.38
LHX1P48742 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.43■□□□□ 0.38
LHX1P48742 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.43■□□□□ 0.38
LHX1P48742 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
LHX1P48742 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
LHX1P48742 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 AC107890.1-201ENST00000422478 521 ntBASIC17.43■□□□□ 0.38
LHX1P48742 AGGF1P2-201ENST00000426656 2106 ntBASIC17.43■□□□□ 0.38
LHX1P48742 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LHX1P48742 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.43■□□□□ 0.38
LHX1P48742 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.43■□□□□ 0.38
LHX1P48742 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
LHX1P48742 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms