Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC12.89□□□□□ -0.35
CXCL1P09341 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
CXCL1P09341 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC12.89□□□□□ -0.35
CXCL1P09341 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC12.89□□□□□ -0.35
CXCL1P09341 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC12.88□□□□□ -0.35
CXCL1P09341 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC12.88□□□□□ -0.35
CXCL1P09341 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CXCL1P09341 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CXCL1P09341 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
CXCL1P09341 ARHGAP23P1-201ENST00000562773 1937 ntBASIC12.88□□□□□ -0.35
CXCL1P09341 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CXCL1P09341 AL122018.1-201ENST00000446607 2310 ntBASIC12.88□□□□□ -0.35
CXCL1P09341 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC12.88□□□□□ -0.35
CXCL1P09341 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CXCL1P09341 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CXCL1P09341 MDFI-202ENST00000373050 809 ntTSL 2 BASIC12.88□□□□□ -0.35
CXCL1P09341 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CXCL1P09341 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CXCL1P09341 AC026396.1-201ENST00000419388 421 ntBASIC12.88□□□□□ -0.35
CXCL1P09341 FAM201B-201ENST00000458407 597 ntBASIC12.88□□□□□ -0.35
CXCL1P09341 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC12.88□□□□□ -0.35
CXCL1P09341 AC034232.1-201ENST00000506026 1064 ntBASIC12.88□□□□□ -0.35
CXCL1P09341 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CXCL1P09341 MIR4785-201ENST00000585005 73 ntBASIC12.88□□□□□ -0.35
CXCL1P09341 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC12.88□□□□□ -0.35
CXCL1P09341 AL157888.1-201ENST00000631930 593 ntBASIC12.88□□□□□ -0.35
CXCL1P09341 ANKRD20A8P-203ENST00000641373 517 ntBASIC12.88□□□□□ -0.35
CXCL1P09341 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CXCL1P09341 AC016027.1-202ENST00000607927 1699 ntBASIC12.88□□□□□ -0.35
CXCL1P09341 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC12.88□□□□□ -0.35
CXCL1P09341 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
CXCL1P09341 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CXCL1P09341 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CXCL1P09341 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CXCL1P09341 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC12.88□□□□□ -0.35
CXCL1P09341 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC12.88□□□□□ -0.35
CXCL1P09341 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CXCL1P09341 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
CXCL1P09341 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
CXCL1P09341 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
CXCL1P09341 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CXCL1P09341 FRMD8P1-201ENST00000440433 1524 ntBASIC12.88□□□□□ -0.35
CXCL1P09341 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC12.88□□□□□ -0.35
CXCL1P09341 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CXCL1P09341 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
CXCL1P09341 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC12.87□□□□□ -0.35
CXCL1P09341 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
CXCL1P09341 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC12.87□□□□□ -0.35
CXCL1P09341 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC12.87□□□□□ -0.35
CXCL1P09341 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
CXCL1P09341 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
CXCL1P09341 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CXCL1P09341 AC096633.1-201ENST00000422446 749 ntBASIC12.87□□□□□ -0.35
CXCL1P09341 AC142381.4-202ENST00000563973 229 ntBASIC12.87□□□□□ -0.35
CXCL1P09341 GPX4-207ENST00000589115 812 ntTSL 2 BASIC12.87□□□□□ -0.35
CXCL1P09341 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC12.87□□□□□ -0.35
CXCL1P09341 GLDC-219ENST00000640208 420 ntTSL 2 BASIC12.87□□□□□ -0.35
CXCL1P09341 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
CXCL1P09341 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
CXCL1P09341 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC12.87□□□□□ -0.35
CXCL1P09341 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CXCL1P09341 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CXCL1P09341 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CXCL1P09341 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
CXCL1P09341 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
CXCL1P09341 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
CXCL1P09341 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CXCL1P09341 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CXCL1P09341 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC12.86□□□□□ -0.35
CXCL1P09341 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CXCL1P09341 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CXCL1P09341 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC12.86□□□□□ -0.35
CXCL1P09341 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC12.86□□□□□ -0.35
CXCL1P09341 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC12.86□□□□□ -0.35
CXCL1P09341 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CXCL1P09341 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms