Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.01■□□□□ 0.15
HOXC4P09017 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HOXC4P09017 AC022144.1-201ENST00000602255 1580 ntBASIC16.01■□□□□ 0.15
HOXC4P09017 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
HOXC4P09017 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
HOXC4P09017 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HOXC4P09017 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HOXC4P09017 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HOXC4P09017 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HOXC4P09017 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.01■□□□□ 0.15
HOXC4P09017 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.01■□□□□ 0.15
HOXC4P09017 MRPS18AP1-201ENST00000414458 589 ntBASIC16.01■□□□□ 0.15
HOXC4P09017 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.01■□□□□ 0.15
HOXC4P09017 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.01■□□□□ 0.15
HOXC4P09017 AC245100.5-201ENST00000452108 331 ntBASIC16.01■□□□□ 0.15
HOXC4P09017 UGT1A2P-201ENST00000454886 866 ntBASIC16.01■□□□□ 0.15
HOXC4P09017 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.01■□□□□ 0.15
HOXC4P09017 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.01■□□□□ 0.15
HOXC4P09017 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HOXC4P09017 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HOXC4P09017 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.01■□□□□ 0.15
HOXC4P09017 RN7SL204P-201ENST00000582831 262 ntBASIC16.01■□□□□ 0.15
HOXC4P09017 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.01■□□□□ 0.15
HOXC4P09017 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HOXC4P09017 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HOXC4P09017 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HOXC4P09017 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
HOXC4P09017 FZD10-202ENST00000539839 3282 ntBASIC16.01■□□□□ 0.15
HOXC4P09017 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HOXC4P09017 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.01■□□□□ 0.15
HOXC4P09017 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HOXC4P09017 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.01■□□□□ 0.15
HOXC4P09017 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HOXC4P09017 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HOXC4P09017 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16■□□□□ 0.15
HOXC4P09017 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16■□□□□ 0.15
HOXC4P09017 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16■□□□□ 0.15
HOXC4P09017 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16■□□□□ 0.15
HOXC4P09017 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16■□□□□ 0.15
HOXC4P09017 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
HOXC4P09017 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16■□□□□ 0.15
HOXC4P09017 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16■□□□□ 0.15
HOXC4P09017 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16■□□□□ 0.15
HOXC4P09017 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
HOXC4P09017 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 CALY-203ENST00000368558 825 ntTSL 5 BASIC16■□□□□ 0.15
HOXC4P09017 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16■□□□□ 0.15
HOXC4P09017 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16■□□□□ 0.15
HOXC4P09017 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16■□□□□ 0.15
HOXC4P09017 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16■□□□□ 0.15
HOXC4P09017 AC002472.2-201ENST00000442739 958 ntBASIC16■□□□□ 0.15
HOXC4P09017 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
HOXC4P09017 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16■□□□□ 0.15
HOXC4P09017 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16■□□□□ 0.15
HOXC4P09017 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16■□□□□ 0.15
HOXC4P09017 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16■□□□□ 0.15
HOXC4P09017 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16■□□□□ 0.15
HOXC4P09017 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
HOXC4P09017 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16■□□□□ 0.15
HOXC4P09017 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
HOXC4P09017 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
HOXC4P09017 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
HOXC4P09017 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16■□□□□ 0.15
HOXC4P09017 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HOXC4P09017 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HOXC4P09017 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
HOXC4P09017 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.99■□□□□ 0.15
HOXC4P09017 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HOXC4P09017 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HOXC4P09017 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.99■□□□□ 0.15
HOXC4P09017 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HOXC4P09017 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
HOXC4P09017 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HOXC4P09017 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.99■□□□□ 0.15
HOXC4P09017 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HOXC4P09017 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.99■□□□□ 0.15
HOXC4P09017 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.99■□□□□ 0.15
HOXC4P09017 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.99■□□□□ 0.15
HOXC4P09017 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
HOXC4P09017 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HOXC4P09017 SERBP1P3-201ENST00000459980 809 ntBASIC15.99■□□□□ 0.15
HOXC4P09017 OARD1-208ENST00000469104 704 ntTSL 2 BASIC15.99■□□□□ 0.15
HOXC4P09017 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms