Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC20.53■□□□□ 0.88
CACNA1FO60840 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC20.53■□□□□ 0.88
CACNA1FO60840 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1FO60840 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1FO60840 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1FO60840 FAM207CP-201ENST00000443486 507 ntBASIC20.53■□□□□ 0.88
CACNA1FO60840 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1FO60840 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC20.53■□□□□ 0.88
CACNA1FO60840 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1FO60840 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC20.53■□□□□ 0.88
CACNA1FO60840 AC004790.1-201ENST00000612686 536 ntBASIC20.53■□□□□ 0.88
CACNA1FO60840 5S_rRNA.22-201ENST00000614916 106 ntBASIC20.53■□□□□ 0.88
CACNA1FO60840 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC20.53■□□□□ 0.88
CACNA1FO60840 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1FO60840 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1FO60840 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1FO60840 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CACNA1FO60840 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC20.53■□□□□ 0.88
CACNA1FO60840 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CACNA1FO60840 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC20.52■□□□□ 0.88
CACNA1FO60840 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CACNA1FO60840 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CACNA1FO60840 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CACNA1FO60840 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CACNA1FO60840 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CACNA1FO60840 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CACNA1FO60840 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC20.52■□□□□ 0.88
CACNA1FO60840 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC20.52■□□□□ 0.88
CACNA1FO60840 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CACNA1FO60840 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC20.52■□□□□ 0.88
CACNA1FO60840 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CACNA1FO60840 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CACNA1FO60840 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CACNA1FO60840 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC20.52■□□□□ 0.88
CACNA1FO60840 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CACNA1FO60840 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CACNA1FO60840 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CACNA1FO60840 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CACNA1FO60840 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CACNA1FO60840 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CACNA1FO60840 RPL37AP1-201ENST00000412502 279 ntBASIC20.52■□□□□ 0.87
CACNA1FO60840 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CACNA1FO60840 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC20.52■□□□□ 0.87
CACNA1FO60840 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC20.52■□□□□ 0.87
CACNA1FO60840 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC20.52■□□□□ 0.87
CACNA1FO60840 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC20.52■□□□□ 0.87
CACNA1FO60840 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC20.52■□□□□ 0.87
CACNA1FO60840 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.87
CACNA1FO60840 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CACNA1FO60840 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CACNA1FO60840 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC20.51■□□□□ 0.87
CACNA1FO60840 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CACNA1FO60840 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CACNA1FO60840 PCDHB19P-201ENST00000570871 2371 ntBASIC20.51■□□□□ 0.87
CACNA1FO60840 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CACNA1FO60840 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC20.51■□□□□ 0.87
CACNA1FO60840 HLA-V-204ENST00000476601 1289 ntBASIC20.51■□□□□ 0.87
CACNA1FO60840 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC20.51■□□□□ 0.87
CACNA1FO60840 AC243562.2-201ENST00000561247 970 ntBASIC20.51■□□□□ 0.87
CACNA1FO60840 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC20.51■□□□□ 0.87
CACNA1FO60840 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
CACNA1FO60840 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CACNA1FO60840 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC20.51■□□□□ 0.87
CACNA1FO60840 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CACNA1FO60840 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC20.51■□□□□ 0.87
CACNA1FO60840 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
CACNA1FO60840 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CACNA1FO60840 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CACNA1FO60840 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CACNA1FO60840 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC20.5■□□□□ 0.87
CACNA1FO60840 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
CACNA1FO60840 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
CACNA1FO60840 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CACNA1FO60840 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC20.5■□□□□ 0.87
CACNA1FO60840 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CACNA1FO60840 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC20.5■□□□□ 0.87
CACNA1FO60840 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC20.5■□□□□ 0.87
CACNA1FO60840 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC20.5■□□□□ 0.87
CACNA1FO60840 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
CACNA1FO60840 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
CACNA1FO60840 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
CACNA1FO60840 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC20.5■□□□□ 0.87
CACNA1FO60840 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
CACNA1FO60840 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC20.5■□□□□ 0.87
CACNA1FO60840 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC20.5■□□□□ 0.87
CACNA1FO60840 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 FRMD6-AS1-201ENST00000617151 2229 ntBASIC20.5■□□□□ 0.87
CACNA1FO60840 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
CACNA1FO60840 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CACNA1FO60840 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms