Protein–RNA interactions for Protein: O43707

ACTN4, Alpha-actinin-4, humanhuman

Known RBP Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4O43707 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ACTN4O43707 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
ACTN4O43707 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ACTN4O43707 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC18.56■□□□□ 0.56
ACTN4O43707 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ACTN4O43707 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
ACTN4O43707 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.56■□□□□ 0.56
ACTN4O43707 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ACTN4O43707 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
ACTN4O43707 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ACTN4O43707 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.55■□□□□ 0.56
ACTN4O43707 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
ACTN4O43707 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ACTN4O43707 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
ACTN4O43707 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ACTN4O43707 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ACTN4O43707 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ACTN4O43707 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
ACTN4O43707 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ACTN4O43707 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ACTN4O43707 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.55■□□□□ 0.56
ACTN4O43707 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ACTN4O43707 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
ACTN4O43707 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.55■□□□□ 0.56
ACTN4O43707 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.55■□□□□ 0.56
ACTN4O43707 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC18.55■□□□□ 0.56
ACTN4O43707 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
ACTN4O43707 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.55■□□□□ 0.56
ACTN4O43707 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
ACTN4O43707 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.55■□□□□ 0.56
ACTN4O43707 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.55■□□□□ 0.56
ACTN4O43707 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.55■□□□□ 0.56
ACTN4O43707 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
ACTN4O43707 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.55■□□□□ 0.56
ACTN4O43707 AL031055.1-201ENST00000606362 631 ntBASIC18.55■□□□□ 0.56
ACTN4O43707 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC18.55■□□□□ 0.56
ACTN4O43707 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.55■□□□□ 0.56
ACTN4O43707 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ACTN4O43707 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
ACTN4O43707 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
ACTN4O43707 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ACTN4O43707 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
ACTN4O43707 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
ACTN4O43707 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.55■□□□□ 0.56
ACTN4O43707 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ACTN4O43707 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ACTN4O43707 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ACTN4O43707 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.54■□□□□ 0.56
ACTN4O43707 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
ACTN4O43707 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.54■□□□□ 0.56
ACTN4O43707 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.54■□□□□ 0.56
ACTN4O43707 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
ACTN4O43707 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ACTN4O43707 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
ACTN4O43707 AL139384.1-201ENST00000612143 3047 ntBASIC18.54■□□□□ 0.56
ACTN4O43707 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
ACTN4O43707 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
ACTN4O43707 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ACTN4O43707 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
ACTN4O43707 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.54■□□□□ 0.56
ACTN4O43707 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.54■□□□□ 0.56
ACTN4O43707 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.54■□□□□ 0.56
ACTN4O43707 HCG4B-203ENST00000450128 991 ntBASIC18.54■□□□□ 0.56
ACTN4O43707 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
ACTN4O43707 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.54■□□□□ 0.56
ACTN4O43707 MIR3909-201ENST00000579518 119 ntBASIC18.54■□□□□ 0.56
ACTN4O43707 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
ACTN4O43707 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
ACTN4O43707 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
ACTN4O43707 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
ACTN4O43707 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ACTN4O43707 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.54■□□□□ 0.56
ACTN4O43707 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
ACTN4O43707 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
ACTN4O43707 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
ACTN4O43707 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ACTN4O43707 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
ACTN4O43707 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ACTN4O43707 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ACTN4O43707 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.53■□□□□ 0.56
ACTN4O43707 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ACTN4O43707 PAUPAR-201ENST00000630360 2965 ntBASIC18.53■□□□□ 0.56
ACTN4O43707 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
ACTN4O43707 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ACTN4O43707 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
ACTN4O43707 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ACTN4O43707 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
ACTN4O43707 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ACTN4O43707 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
ACTN4O43707 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.53■□□□□ 0.56
ACTN4O43707 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.53■□□□□ 0.56
ACTN4O43707 AL513480.1-201ENST00000451731 511 ntBASIC18.53■□□□□ 0.56
ACTN4O43707 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ACTN4O43707 RNA5SP415-201ENST00000517246 115 ntBASIC18.53■□□□□ 0.56
ACTN4O43707 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.53■□□□□ 0.56
ACTN4O43707 KRT126P-201ENST00000549467 1181 ntBASIC18.53■□□□□ 0.56
ACTN4O43707 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.53■□□□□ 0.56
ACTN4O43707 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.53■□□□□ 0.56
ACTN4O43707 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
ACTN4O43707 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms