Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 AC012569.1-201ENST00000591191 1524 ntBASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 AC112504.1-201ENST00000623415 1841 ntBASIC17.31■□□□□ 0.36
PCDHA3Q9Y5H8 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 AC092384.3-202ENST00000564646 2873 ntBASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 UNC93B7-201ENST00000509439 705 ntBASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 PGM5P2-202ENST00000637225 1043 ntBASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 CDC14C-201ENST00000428251 1719 ntBASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDHA3Q9Y5H8 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 MRPL20P1-201ENST00000400819 433 ntBASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 HNRNPDP1-201ENST00000439535 754 ntBASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 TP73-AS1-207ENST00000624167 988 ntBASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 AL592424.1-201ENST00000563624 1536 ntBASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PCDHA3Q9Y5H8 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 AC005622.1-201ENST00000636801 1703 ntBASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 FAM185BP-201ENST00000443595 716 ntBASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 AC018712.1-201ENST00000455767 687 ntBASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 LINC02447-202ENST00000501888 2146 ntBASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDHA3Q9Y5H8 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms