Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 RPS2P32-201ENST00000439199 892 ntBASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 AC124312.2-201ENST00000546615 427 ntTSL 3 BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 MPDU1-223ENST00000582151 728 ntBASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 AC073389.1-201ENST00000595595 795 ntBASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 AC004840.1-201ENST00000636359 365 ntBASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 PCDHA12-202ENST00000613593 2588 ntBASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 OR6D1P-203ENST00000641209 4860 ntBASIC17.24■□□□□ 0.35
LIMD1Q9UGP4 AC099398.1-201ENST00000567919 2776 ntBASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 AL353705.2-201ENST00000428243 662 ntBASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 AC135586.1-201ENST00000539323 574 ntBASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 AC104794.3-201ENST00000566840 1248 ntBASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 AC021097.1-201ENST00000607902 574 ntBASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
LIMD1Q9UGP4 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 HLA-H-201ENST00000383620 1096 ntBASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 AL512384.1-201ENST00000406683 331 ntBASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 AP006294.1-201ENST00000415407 339 ntBASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 POLE2-203ENST00000553805 496 ntTSL 2 BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 RN7SL828P-201ENST00000607615 303 ntBASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 AL162274.1-201ENST00000617191 1098 ntBASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIMD1Q9UGP4 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
LIMD1Q9UGP4 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms