Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 IPPK-202ENST00000375522 882 ntTSL 3 BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 TUBB8P12-201ENST00000308911 1335 ntBASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 TUBB7P-202ENST00000428444 1305 ntBASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 TUBB8P7-204ENST00000567960 1332 ntBASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC39Q9UFE4 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 AF238378.1-201ENST00000526806 358 ntBASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 AL139424.1-201ENST00000607572 797 ntBASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 BLK-205ENST00000529894 2017 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC39Q9UFE4 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 ALOX12P2-203ENST00000570921 1945 ntBASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 AP002414.1-201ENST00000391405 1147 ntBASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 SLC9A7P1-201ENST00000554295 3311 ntBASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 OVCH1-AS1-204ENST00000641955 5529 ntBASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 AC006538.1-201ENST00000567905 1585 ntBASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CCDC39Q9UFE4 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC39Q9UFE4 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms