Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 AL023806.1-201ENST00000603994 1649 ntBASIC16.05■□□□□ 0.16
CLIP3Q96DZ5 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 TIMM8BP1-201ENST00000452384 211 ntBASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CLIP3Q96DZ5 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 AL671277.1-201ENST00000429656 993 ntBASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 AC105339.1-204ENST00000636249 355 ntBASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 AL353732.1-201ENST00000569618 1459 ntBASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.03■□□□□ 0.16
CLIP3Q96DZ5 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 LINC02228-204ENST00000642115 2962 ntBASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 AL118508.1-201ENST00000613502 2345 ntBASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.02■□□□□ 0.16
CLIP3Q96DZ5 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms