Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC21.54■■□□□ 1.04
RTF1Q92541 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTF1Q92541 GOLGA2P9-201ENST00000596977 1937 ntBASIC21.54■■□□□ 1.04
RTF1Q92541 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC21.54■■□□□ 1.04
RTF1Q92541 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTF1Q92541 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTF1Q92541 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
RTF1Q92541 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
RTF1Q92541 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
RTF1Q92541 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC21.54■■□□□ 1.04
RTF1Q92541 GCK-202ENST00000345378 2421 ntTSL 2 BASIC21.54■■□□□ 1.04
RTF1Q92541 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTF1Q92541 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTF1Q92541 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC21.53■■□□□ 1.04
RTF1Q92541 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RTF1Q92541 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTF1Q92541 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
RTF1Q92541 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTF1Q92541 RNF216P1-203ENST00000404404 2427 ntBASIC21.53■■□□□ 1.04
RTF1Q92541 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC21.53■■□□□ 1.04
RTF1Q92541 AQP6-203ENST00000551733 849 ntTSL 3 BASIC21.53■■□□□ 1.04
RTF1Q92541 MIR3197-201ENST00000582241 73 ntBASIC21.53■■□□□ 1.04
RTF1Q92541 INO80C-206ENST00000586489 594 ntTSL 3 BASIC21.53■■□□□ 1.04
RTF1Q92541 AL158211.3-201ENST00000607385 239 ntBASIC21.53■■□□□ 1.04
RTF1Q92541 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RTF1Q92541 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTF1Q92541 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTF1Q92541 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC21.53■■□□□ 1.04
RTF1Q92541 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTF1Q92541 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTF1Q92541 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
RTF1Q92541 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTF1Q92541 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
RTF1Q92541 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTF1Q92541 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
RTF1Q92541 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC21.53■■□□□ 1.04
RTF1Q92541 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTF1Q92541 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
RTF1Q92541 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RTF1Q92541 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
RTF1Q92541 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
RTF1Q92541 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
RTF1Q92541 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
RTF1Q92541 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RTF1Q92541 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
RTF1Q92541 AC093724.1-201ENST00000448659 1027 ntBASIC21.52■■□□□ 1.04
RTF1Q92541 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC21.52■■□□□ 1.04
RTF1Q92541 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC21.52■■□□□ 1.04
RTF1Q92541 RNA5SP410-201ENST00000516285 106 ntBASIC21.52■■□□□ 1.04
RTF1Q92541 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC21.52■■□□□ 1.04
RTF1Q92541 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC21.52■■□□□ 1.04
RTF1Q92541 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
RTF1Q92541 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
RTF1Q92541 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC21.52■■□□□ 1.04
RTF1Q92541 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC21.51■■□□□ 1.03
RTF1Q92541 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
RTF1Q92541 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RTF1Q92541 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC21.51■■□□□ 1.03
RTF1Q92541 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC21.51■■□□□ 1.03
RTF1Q92541 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
RTF1Q92541 INGX-202ENST00000489074 768 ntBASIC21.51■■□□□ 1.03
RTF1Q92541 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC21.51■■□□□ 1.03
RTF1Q92541 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC21.51■■□□□ 1.03
RTF1Q92541 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC21.51■■□□□ 1.03
RTF1Q92541 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC21.51■■□□□ 1.03
RTF1Q92541 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC21.51■■□□□ 1.03
RTF1Q92541 COQ4-205ENST00000609948 956 ntTSL 2 BASIC21.51■■□□□ 1.03
RTF1Q92541 AC007967.4-201ENST00000614700 386 ntBASIC21.51■■□□□ 1.03
RTF1Q92541 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RTF1Q92541 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
RTF1Q92541 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RTF1Q92541 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC21.51■■□□□ 1.03
RTF1Q92541 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC21.51■■□□□ 1.03
RTF1Q92541 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
RTF1Q92541 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RTF1Q92541 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
RTF1Q92541 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RTF1Q92541 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
RTF1Q92541 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RTF1Q92541 AC078925.2-201ENST00000624013 1973 ntBASIC21.5■■□□□ 1.03
RTF1Q92541 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RTF1Q92541 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC21.5■■□□□ 1.03
RTF1Q92541 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms