Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 MED15P5-201ENST00000423150 992 ntBASIC14.71□□□□□ -0.05
SKA3Q8IX90 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC14.71□□□□□ -0.05
SKA3Q8IX90 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC14.71□□□□□ -0.05
SKA3Q8IX90 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
SKA3Q8IX90 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC14.71□□□□□ -0.05
SKA3Q8IX90 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC14.71□□□□□ -0.05
SKA3Q8IX90 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
SKA3Q8IX90 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 AQP6-205ENST00000618286 829 ntTSL 5 BASIC14.71□□□□□ -0.05
SKA3Q8IX90 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SKA3Q8IX90 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC14.71□□□□□ -0.05
SKA3Q8IX90 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC14.71□□□□□ -0.05
SKA3Q8IX90 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14.71□□□□□ -0.05
SKA3Q8IX90 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
SKA3Q8IX90 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SKA3Q8IX90 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SKA3Q8IX90 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SKA3Q8IX90 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.06
SKA3Q8IX90 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SKA3Q8IX90 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SKA3Q8IX90 SNX33P1-201ENST00000592116 1762 ntBASIC14.7□□□□□ -0.06
SKA3Q8IX90 PC-214ENST00000628663 1470 ntTSL 5 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SKA3Q8IX90 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SKA3Q8IX90 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SKA3Q8IX90 HLA-A-202ENST00000376806 1854 ntBASIC14.7□□□□□ -0.06
SKA3Q8IX90 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SKA3Q8IX90 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SKA3Q8IX90 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SKA3Q8IX90 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SKA3Q8IX90 GCK-202ENST00000345378 2421 ntTSL 2 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 MIR940-201ENST00000401276 94 ntBASIC14.7□□□□□ -0.06
SKA3Q8IX90 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 AL591424.1-201ENST00000442569 1213 ntBASIC14.7□□□□□ -0.06
SKA3Q8IX90 KRT18P3-201ENST00000451602 1288 ntBASIC14.7□□□□□ -0.06
SKA3Q8IX90 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 RNA5SP416-201ENST00000516838 111 ntBASIC14.7□□□□□ -0.06
SKA3Q8IX90 MAL2-202ENST00000531508 892 ntTSL 3 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 FAM197Y3-203ENST00000618346 717 ntBASIC14.7□□□□□ -0.06
SKA3Q8IX90 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 AL139011.1-202ENST00000642063 584 ntBASIC14.7□□□□□ -0.06
SKA3Q8IX90 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SKA3Q8IX90 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
SKA3Q8IX90 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SKA3Q8IX90 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SKA3Q8IX90 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SKA3Q8IX90 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SKA3Q8IX90 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
SKA3Q8IX90 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SKA3Q8IX90 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SKA3Q8IX90 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.69□□□□□ -0.06
SKA3Q8IX90 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SKA3Q8IX90 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
SKA3Q8IX90 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
SKA3Q8IX90 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SKA3Q8IX90 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SKA3Q8IX90 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SKA3Q8IX90 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SKA3Q8IX90 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.69□□□□□ -0.06
SKA3Q8IX90 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SKA3Q8IX90 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
SKA3Q8IX90 MIR574-201ENST00000385209 96 ntBASIC14.69□□□□□ -0.06
SKA3Q8IX90 HMGA1P7-201ENST00000406908 502 ntBASIC14.69□□□□□ -0.06
SKA3Q8IX90 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
SKA3Q8IX90 AP000347.1-202ENST00000435868 847 ntBASIC14.69□□□□□ -0.06
SKA3Q8IX90 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
SKA3Q8IX90 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC14.69□□□□□ -0.06
SKA3Q8IX90 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC14.69□□□□□ -0.06
SKA3Q8IX90 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
SKA3Q8IX90 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC14.69□□□□□ -0.06
SKA3Q8IX90 AC023141.13-201ENST00000604991 943 ntBASIC14.69□□□□□ -0.06
SKA3Q8IX90 AC004877.2-201ENST00000623941 599 ntBASIC14.69□□□□□ -0.06
SKA3Q8IX90 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC14.69□□□□□ -0.06
SKA3Q8IX90 AC007064.4-201ENST00000637740 555 ntBASIC14.69□□□□□ -0.06
SKA3Q8IX90 AL645728.2-201ENST00000641974 660 ntBASIC14.69□□□□□ -0.06
SKA3Q8IX90 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SKA3Q8IX90 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SKA3Q8IX90 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC14.69□□□□□ -0.06
SKA3Q8IX90 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
SKA3Q8IX90 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms