Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 AL445675.2-201ENST00000620291 557 ntBASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 AL109954.1-202ENST00000564051 2148 ntBASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC28AQ8IWP9 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 AC092053.1-201ENST00000605787 1936 ntBASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 SUPT20HL2-201ENST00000486479 2409 ntBASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 RNF121-214ENST00000533380 870 ntTSL 3 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 ITM2C-210ENST00000620962 501 ntBASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 HLA-A-202ENST00000376806 1854 ntBASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
CCDC28AQ8IWP9 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC13.9□□□□□ -0.19
CCDC28AQ8IWP9 AC034236.2-201ENST00000606662 1610 ntBASIC13.9□□□□□ -0.19
CCDC28AQ8IWP9 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
CCDC28AQ8IWP9 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.19
CCDC28AQ8IWP9 AL135905.2-201ENST00000584934 1404 ntBASIC13.9□□□□□ -0.19
CCDC28AQ8IWP9 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC13.9□□□□□ -0.19
CCDC28AQ8IWP9 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 KSR1P1-201ENST00000446298 240 ntBASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 TSPY20P-201ENST00000450910 630 ntBASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC28AQ8IWP9 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms