Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
UBE3BQ7Z3V4 AC073592.8-201ENST00000624126 511 ntBASIC20.55■□□□□ 0.88
UBE3BQ7Z3V4 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC20.55■□□□□ 0.88
UBE3BQ7Z3V4 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC20.55■□□□□ 0.88
UBE3BQ7Z3V4 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
UBE3BQ7Z3V4 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC20.55■□□□□ 0.88
UBE3BQ7Z3V4 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
UBE3BQ7Z3V4 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
UBE3BQ7Z3V4 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC20.55■□□□□ 0.88
UBE3BQ7Z3V4 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
UBE3BQ7Z3V4 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
UBE3BQ7Z3V4 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
UBE3BQ7Z3V4 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC20.55■□□□□ 0.88
UBE3BQ7Z3V4 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 AC092171.3-201ENST00000610122 2651 ntBASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 MIR661-201ENST00000384842 89 ntBASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 AC027369.6-201ENST00000525520 931 ntBASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 AL138828.2-201ENST00000615812 383 ntBASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 RELA-227ENST00000615805 2236 ntTSL 5 BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
UBE3BQ7Z3V4 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 LHX6-205ENST00000464484 666 ntTSL 2 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 AC100757.3-201ENST00000622361 1406 ntBASIC20.53■□□□□ 0.88
UBE3BQ7Z3V4 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 MTND6P24-201ENST00000440466 518 ntBASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 MAX-210ENST00000555419 765 ntTSL 5 BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC20.52■□□□□ 0.88
UBE3BQ7Z3V4 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms