Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 AC096633.1-201ENST00000422446 749 ntBASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 CDV3-207ENST00000508481 661 ntTSL 3 BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 BNIP3P18-201ENST00000593976 575 ntBASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
PPP4R4Q6NUP7 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PPP4R4Q6NUP7 TP73-AS1-210ENST00000637775 1455 ntBASIC15.96■□□□□ 0.14
PPP4R4Q6NUP7 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
PPP4R4Q6NUP7 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
PPP4R4Q6NUP7 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PPP4R4Q6NUP7 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 AC009533.2-201ENST00000543664 586 ntBASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 FICD-205ENST00000552758 603 ntTSL 2 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PPP4R4Q6NUP7 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 AC004870.1-201ENST00000315132 882 ntBASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 TPM4P1-201ENST00000436100 807 ntBASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 MEG3-211ENST00000452514 461 ntTSL 3 BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PPP4R4Q6NUP7 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms