Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC144BQ3MJ40 AC093525.9-201ENST00000624961 1746 ntBASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 TFAMP1-201ENST00000412727 736 ntBASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 THTPA-204ENST00000554970 569 ntTSL 4 BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 THTPA-206ENST00000556015 535 ntTSL 3 BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 AC243562.1-201ENST00000560672 389 ntBASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 AC015911.4-201ENST00000588022 1070 ntBASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC144BQ3MJ40 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 CYP2T1P-202ENST00000641596 2535 ntBASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 COX20P2-201ENST00000452636 358 ntBASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 DUX4L27-201ENST00000554796 1261 ntBASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 CD7-202ENST00000578509 925 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 AL390955.2-201ENST00000603032 514 ntBASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC144BQ3MJ40 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 AC092364.2-201ENST00000596710 2692 ntBASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 FAM58DP-201ENST00000428076 619 ntBASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC144BQ3MJ40 RN7SL589P-201ENST00000481268 310 ntBASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms