Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A4P53420 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.44■□□□□ 0.38
COL4A4P53420 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
COL4A4P53420 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A4P53420 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
COL4A4P53420 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A4P53420 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC17.44■□□□□ 0.38
COL4A4P53420 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC17.44■□□□□ 0.38
COL4A4P53420 PARP8-218ENST00000513738 596 ntTSL 4 BASIC17.44■□□□□ 0.38
COL4A4P53420 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A4P53420 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.44■□□□□ 0.38
COL4A4P53420 AGGF1P2-201ENST00000426656 2106 ntBASIC17.44■□□□□ 0.38
COL4A4P53420 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A4P53420 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A4P53420 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A4P53420 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.44■□□□□ 0.38
COL4A4P53420 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A4P53420 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A4P53420 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A4P53420 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.44■□□□□ 0.38
COL4A4P53420 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL4A4P53420 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A4P53420 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A4P53420 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.43■□□□□ 0.38
COL4A4P53420 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A4P53420 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.43■□□□□ 0.38
COL4A4P53420 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A4P53420 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A4P53420 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A4P53420 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
COL4A4P53420 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A4P53420 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.43■□□□□ 0.38
COL4A4P53420 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
COL4A4P53420 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.43■□□□□ 0.38
COL4A4P53420 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC17.43■□□□□ 0.38
COL4A4P53420 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.43■□□□□ 0.38
COL4A4P53420 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A4P53420 RRP7BP-205ENST00000566851 833 ntBASIC17.43■□□□□ 0.38
COL4A4P53420 AC061975.2-201ENST00000581722 295 ntBASIC17.43■□□□□ 0.38
COL4A4P53420 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC17.43■□□□□ 0.38
COL4A4P53420 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.43■□□□□ 0.38
COL4A4P53420 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.43■□□□□ 0.38
COL4A4P53420 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC17.43■□□□□ 0.38
COL4A4P53420 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A4P53420 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A4P53420 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
COL4A4P53420 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A4P53420 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A4P53420 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.43■□□□□ 0.38
COL4A4P53420 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.43■□□□□ 0.38
COL4A4P53420 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.43■□□□□ 0.38
COL4A4P53420 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
COL4A4P53420 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
COL4A4P53420 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.43■□□□□ 0.38
COL4A4P53420 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.43■□□□□ 0.38
COL4A4P53420 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.43■□□□□ 0.38
COL4A4P53420 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC17.43■□□□□ 0.38
COL4A4P53420 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
COL4A4P53420 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC17.43■□□□□ 0.38
COL4A4P53420 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.43■□□□□ 0.38
COL4A4P53420 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL4A4P53420 PDIA3P1-201ENST00000471856 1510 ntBASIC17.42■□□□□ 0.38
COL4A4P53420 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.42■□□□□ 0.38
COL4A4P53420 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.42■□□□□ 0.38
COL4A4P53420 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
COL4A4P53420 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC17.42■□□□□ 0.38
COL4A4P53420 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC17.42■□□□□ 0.38
COL4A4P53420 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 KRT8P39-201ENST00000396270 1433 ntBASIC17.42■□□□□ 0.38
COL4A4P53420 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.42■□□□□ 0.38
COL4A4P53420 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC17.42■□□□□ 0.38
COL4A4P53420 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.42■□□□□ 0.38
COL4A4P53420 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.42■□□□□ 0.38
COL4A4P53420 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
COL4A4P53420 MIR1908-201ENST00000410394 80 ntBASIC17.42■□□□□ 0.38
COL4A4P53420 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.42■□□□□ 0.38
COL4A4P53420 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.42■□□□□ 0.38
COL4A4P53420 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
COL4A4P53420 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL4A4P53420 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL4A4P53420 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms