Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL5A3P25940 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC20.47■□□□□ 0.87
COL5A3P25940 RPL28-207ENST00000558815 616 ntTSL 2 BASIC20.47■□□□□ 0.87
COL5A3P25940 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
COL5A3P25940 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL5A3P25940 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC20.47■□□□□ 0.87
COL5A3P25940 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC20.47■□□□□ 0.87
COL5A3P25940 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL5A3P25940 TP73-213ENST00000604479 1623 ntTSL 5 BASIC20.47■□□□□ 0.87
COL5A3P25940 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL5A3P25940 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL5A3P25940 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL5A3P25940 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL5A3P25940 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
COL5A3P25940 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL5A3P25940 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
COL5A3P25940 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL5A3P25940 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL5A3P25940 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC20.47■□□□□ 0.87
COL5A3P25940 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC20.47■□□□□ 0.87
COL5A3P25940 APRT-204ENST00000563655 709 ntTSL 5 BASIC20.47■□□□□ 0.87
COL5A3P25940 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC20.47■□□□□ 0.87
COL5A3P25940 MIR6787-201ENST00000616675 61 ntBASIC20.47■□□□□ 0.87
COL5A3P25940 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC20.47■□□□□ 0.87
COL5A3P25940 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL5A3P25940 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL5A3P25940 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.46■□□□□ 0.87
COL5A3P25940 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.46■□□□□ 0.87
COL5A3P25940 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC20.46■□□□□ 0.87
COL5A3P25940 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL5A3P25940 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.46■□□□□ 0.87
COL5A3P25940 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL5A3P25940 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC20.46■□□□□ 0.87
COL5A3P25940 TOMM22P5-201ENST00000416399 439 ntBASIC20.46■□□□□ 0.87
COL5A3P25940 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC20.46■□□□□ 0.87
COL5A3P25940 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
COL5A3P25940 KRT18P64-201ENST00000434946 1219 ntBASIC20.46■□□□□ 0.87
COL5A3P25940 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL5A3P25940 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC20.46■□□□□ 0.87
COL5A3P25940 ZNF767P-206ENST00000513792 565 ntBASIC20.46■□□□□ 0.87
COL5A3P25940 RNA5SP412-201ENST00000516234 123 ntBASIC20.46■□□□□ 0.87
COL5A3P25940 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC20.46■□□□□ 0.87
COL5A3P25940 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC20.46■□□□□ 0.87
COL5A3P25940 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
COL5A3P25940 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
COL5A3P25940 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC20.46■□□□□ 0.87
COL5A3P25940 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL5A3P25940 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL5A3P25940 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL5A3P25940 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC20.46■□□□□ 0.87
COL5A3P25940 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL5A3P25940 AC093525.8-201ENST00000624099 1342 ntBASIC20.46■□□□□ 0.87
COL5A3P25940 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL5A3P25940 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL5A3P25940 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC20.45■□□□□ 0.86
COL5A3P25940 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC20.45■□□□□ 0.86
COL5A3P25940 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
COL5A3P25940 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC20.45■□□□□ 0.86
COL5A3P25940 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
COL5A3P25940 AC141586.5-201ENST00000624546 2050 ntBASIC20.45■□□□□ 0.86
COL5A3P25940 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL5A3P25940 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL5A3P25940 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC20.45■□□□□ 0.86
COL5A3P25940 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL5A3P25940 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.45■□□□□ 0.86
COL5A3P25940 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC20.45■□□□□ 0.86
COL5A3P25940 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC20.45■□□□□ 0.86
COL5A3P25940 KRT8P22-201ENST00000562317 1415 ntBASIC20.45■□□□□ 0.86
COL5A3P25940 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL5A3P25940 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL5A3P25940 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL5A3P25940 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A3P25940 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
COL5A3P25940 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A3P25940 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A3P25940 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A3P25940 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A3P25940 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC20.44■□□□□ 0.86
COL5A3P25940 RPL7P3-201ENST00000441388 714 ntBASIC20.44■□□□□ 0.86
COL5A3P25940 AC106760.1-201ENST00000508690 800 ntBASIC20.44■□□□□ 0.86
COL5A3P25940 RIT1-205ENST00000539040 919 ntTSL 2 BASIC20.44■□□□□ 0.86
COL5A3P25940 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A3P25940 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A3P25940 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.44■□□□□ 0.86
COL5A3P25940 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A3P25940 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC20.44■□□□□ 0.86
COL5A3P25940 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A3P25940 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC20.44■□□□□ 0.86
COL5A3P25940 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
COL5A3P25940 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A3P25940 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A3P25940 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
COL5A3P25940 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
COL5A3P25940 APOC3-202ENST00000375345 604 ntTSL 5 BASIC20.44■□□□□ 0.86
COL5A3P25940 MIR1247-201ENST00000408206 136 ntBASIC20.44■□□□□ 0.86
COL5A3P25940 NME4-207ENST00000450036 985 ntTSL 3 BASIC20.44■□□□□ 0.86
COL5A3P25940 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL5A3P25940 TDH-203ENST00000531764 1110 ntBASIC20.44■□□□□ 0.86
COL5A3P25940 KRT90P-201ENST00000549264 1064 ntBASIC20.44■□□□□ 0.86
COL5A3P25940 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms