Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL9A1P20849 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
COL9A1P20849 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL9A1P20849 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.9■□□□□ 0.3
COL9A1P20849 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL9A1P20849 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
COL9A1P20849 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL9A1P20849 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL9A1P20849 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.9■□□□□ 0.3
COL9A1P20849 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
COL9A1P20849 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
COL9A1P20849 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.89■□□□□ 0.29
COL9A1P20849 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL9A1P20849 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL9A1P20849 KRT8P49-201ENST00000604166 1432 ntBASIC16.89■□□□□ 0.29
COL9A1P20849 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL9A1P20849 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL9A1P20849 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL9A1P20849 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC16.89■□□□□ 0.29
COL9A1P20849 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC16.89■□□□□ 0.29
COL9A1P20849 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.89■□□□□ 0.29
COL9A1P20849 USB1-202ENST00000423271 1217 ntTSL 2 BASIC16.89■□□□□ 0.29
COL9A1P20849 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL9A1P20849 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC16.89■□□□□ 0.29
COL9A1P20849 SLC25A47P1-201ENST00000531577 414 ntBASIC16.89■□□□□ 0.29
COL9A1P20849 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC16.89■□□□□ 0.29
COL9A1P20849 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL9A1P20849 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC16.89■□□□□ 0.29
COL9A1P20849 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL9A1P20849 AC103798.2-201ENST00000624292 632 ntBASIC16.89■□□□□ 0.29
COL9A1P20849 AP001350.2-201ENST00000625104 1094 ntBASIC16.89■□□□□ 0.29
COL9A1P20849 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.89■□□□□ 0.29
COL9A1P20849 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL9A1P20849 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL9A1P20849 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL9A1P20849 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.89■□□□□ 0.29
COL9A1P20849 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.89■□□□□ 0.29
COL9A1P20849 AL138688.1-201ENST00000624851 1594 ntBASIC16.89■□□□□ 0.29
COL9A1P20849 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.89■□□□□ 0.29
COL9A1P20849 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
COL9A1P20849 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL9A1P20849 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.88■□□□□ 0.29
COL9A1P20849 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.88■□□□□ 0.29
COL9A1P20849 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL9A1P20849 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL9A1P20849 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL9A1P20849 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL9A1P20849 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL9A1P20849 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL9A1P20849 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL9A1P20849 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL9A1P20849 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.88■□□□□ 0.29
COL9A1P20849 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL9A1P20849 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.88■□□□□ 0.29
COL9A1P20849 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL9A1P20849 AC010740.1-201ENST00000417035 684 ntBASIC16.88■□□□□ 0.29
COL9A1P20849 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.88■□□□□ 0.29
COL9A1P20849 YBX1P6-201ENST00000442962 1002 ntBASIC16.88■□□□□ 0.29
COL9A1P20849 KRT18P66-201ENST00000452970 1269 ntBASIC16.88■□□□□ 0.29
COL9A1P20849 OARD1-212ENST00000482515 832 ntTSL 2 BASIC16.88■□□□□ 0.29
COL9A1P20849 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC16.88■□□□□ 0.29
COL9A1P20849 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
COL9A1P20849 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.88■□□□□ 0.29
COL9A1P20849 RN7SL560P-201ENST00000577943 264 ntBASIC16.88■□□□□ 0.29
COL9A1P20849 MIR4492-201ENST00000581627 80 ntBASIC16.88■□□□□ 0.29
COL9A1P20849 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.88■□□□□ 0.29
COL9A1P20849 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
COL9A1P20849 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
COL9A1P20849 AC093726.1-201ENST00000608064 963 ntBASIC16.88■□□□□ 0.29
COL9A1P20849 AC009542.2-202ENST00000619004 1067 ntBASIC16.88■□□□□ 0.29
COL9A1P20849 ABBA01031663.1-201ENST00000635630 790 ntBASIC16.88■□□□□ 0.29
COL9A1P20849 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.88■□□□□ 0.29
COL9A1P20849 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
COL9A1P20849 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC16.88■□□□□ 0.29
COL9A1P20849 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
COL9A1P20849 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.88■□□□□ 0.29
COL9A1P20849 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL9A1P20849 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL9A1P20849 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL9A1P20849 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL9A1P20849 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC16.87■□□□□ 0.29
COL9A1P20849 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL9A1P20849 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL9A1P20849 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL9A1P20849 MGA-212ENST00000619521 1496 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL9A1P20849 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL9A1P20849 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL9A1P20849 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.87■□□□□ 0.29
COL9A1P20849 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL9A1P20849 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL9A1P20849 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL9A1P20849 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL9A1P20849 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.87■□□□□ 0.29
COL9A1P20849 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC16.87■□□□□ 0.29
COL9A1P20849 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC16.87■□□□□ 0.29
COL9A1P20849 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
COL9A1P20849 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL9A1P20849 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL9A1P20849 ADM-202ENST00000524948 584 ntTSL 2 BASIC16.87■□□□□ 0.29
COL9A1P20849 AC006518.1-201ENST00000541449 943 ntBASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms