Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
VCANP13611 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
VCANP13611 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.85■□□□□ 0.29
VCANP13611 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC16.85■□□□□ 0.29
VCANP13611 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC16.85■□□□□ 0.29
VCANP13611 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC16.85■□□□□ 0.29
VCANP13611 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.85■□□□□ 0.29
VCANP13611 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VCANP13611 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCANP13611 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
VCANP13611 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCANP13611 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCANP13611 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VCANP13611 AC125604.1-201ENST00000496255 707 ntBASIC16.84■□□□□ 0.29
VCANP13611 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCANP13611 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
VCANP13611 RARRES2P5-201ENST00000564013 466 ntBASIC16.84■□□□□ 0.29
VCANP13611 MIR4741-201ENST00000579822 90 ntBASIC16.84■□□□□ 0.29
VCANP13611 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VCANP13611 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VCANP13611 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCANP13611 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCANP13611 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VCANP13611 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VCANP13611 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCANP13611 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VCANP13611 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC16.84■□□□□ 0.29
VCANP13611 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
VCANP13611 SERBP1P3-201ENST00000459980 809 ntBASIC16.84■□□□□ 0.29
VCANP13611 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.84■□□□□ 0.29
VCANP13611 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC16.84■□□□□ 0.29
VCANP13611 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
VCANP13611 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VCANP13611 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.84■□□□□ 0.29
VCANP13611 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.84■□□□□ 0.29
VCANP13611 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
VCANP13611 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VCANP13611 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VCANP13611 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VCANP13611 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC16.83■□□□□ 0.29
VCANP13611 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
VCANP13611 TIMM17BP1-201ENST00000545713 516 ntBASIC16.83■□□□□ 0.29
VCANP13611 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.29
VCANP13611 AC133539.2-201ENST00000604757 467 ntBASIC16.83■□□□□ 0.29
VCANP13611 AC011491.1-203ENST00000637688 543 ntBASIC16.83■□□□□ 0.29
VCANP13611 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VCANP13611 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC16.83■□□□□ 0.29
VCANP13611 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.83■□□□□ 0.28
VCANP13611 RN7SL399P-201ENST00000471648 279 ntBASIC16.83■□□□□ 0.28
VCANP13611 PTP4A1P2-201ENST00000546033 454 ntBASIC16.83■□□□□ 0.28
VCANP13611 PRKXP1-201ENST00000561423 1122 ntBASIC16.83■□□□□ 0.28
VCANP13611 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
VCANP13611 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC16.83■□□□□ 0.28
VCANP13611 AP001527.2-201ENST00000614441 631 ntBASIC16.83■□□□□ 0.28
VCANP13611 AP000346.4-201ENST00000614827 381 ntBASIC16.83■□□□□ 0.28
VCANP13611 PLS3-210ENST00000626746 216 ntTSL 4 BASIC16.83■□□□□ 0.28
VCANP13611 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC16.83■□□□□ 0.28
VCANP13611 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.83■□□□□ 0.28
VCANP13611 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VCANP13611 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.83■□□□□ 0.28
VCANP13611 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VCANP13611 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VCANP13611 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.83■□□□□ 0.28
VCANP13611 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.83■□□□□ 0.28
VCANP13611 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
VCANP13611 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VCANP13611 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VCANP13611 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VCANP13611 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VCANP13611 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC16.83■□□□□ 0.28
VCANP13611 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.83■□□□□ 0.28
VCANP13611 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VCANP13611 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC16.83■□□□□ 0.28
VCANP13611 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.83■□□□□ 0.28
VCANP13611 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC16.83■□□□□ 0.28
VCANP13611 AC104982.3-201ENST00000581995 514 ntBASIC16.83■□□□□ 0.28
VCANP13611 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
VCANP13611 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
VCANP13611 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCANP13611 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCANP13611 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCANP13611 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
VCANP13611 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
VCANP13611 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.82■□□□□ 0.28
VCANP13611 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCANP13611 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCANP13611 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCANP13611 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VCANP13611 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.82■□□□□ 0.28
VCANP13611 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
VCANP13611 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC16.82■□□□□ 0.28
VCANP13611 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VCANP13611 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VCANP13611 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.82■□□□□ 0.28
VCANP13611 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms