Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MBD4O95243 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MBD4O95243 AC005052.1-201ENST00000625181 2492 ntBASIC19.7■□□□□ 0.74
MBD4O95243 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MBD4O95243 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.7■□□□□ 0.74
MBD4O95243 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MBD4O95243 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
MBD4O95243 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
MBD4O95243 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MBD4O95243 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MBD4O95243 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
MBD4O95243 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
MBD4O95243 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
MBD4O95243 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MBD4O95243 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
MBD4O95243 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
MBD4O95243 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
MBD4O95243 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MBD4O95243 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MBD4O95243 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MBD4O95243 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC19.69■□□□□ 0.74
MBD4O95243 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
MBD4O95243 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
MBD4O95243 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MBD4O95243 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC19.69■□□□□ 0.74
MBD4O95243 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC19.69■□□□□ 0.74
MBD4O95243 RARRES2P9-201ENST00000565168 469 ntBASIC19.69■□□□□ 0.74
MBD4O95243 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.69■□□□□ 0.74
MBD4O95243 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC19.69■□□□□ 0.74
MBD4O95243 MIR6080-201ENST00000617359 66 ntBASIC19.69■□□□□ 0.74
MBD4O95243 ORC5-208ENST00000626700 344 ntTSL 3 BASIC19.69■□□□□ 0.74
MBD4O95243 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MBD4O95243 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
MBD4O95243 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
MBD4O95243 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MBD4O95243 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
MBD4O95243 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MBD4O95243 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
MBD4O95243 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MBD4O95243 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MBD4O95243 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MBD4O95243 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC19.69■□□□□ 0.74
MBD4O95243 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MBD4O95243 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MBD4O95243 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
MBD4O95243 ALOX12P2-203ENST00000570921 1945 ntBASIC19.68■□□□□ 0.74
MBD4O95243 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.68■□□□□ 0.74
MBD4O95243 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.68■□□□□ 0.74
MBD4O95243 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.68■□□□□ 0.74
MBD4O95243 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.68■□□□□ 0.74
MBD4O95243 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC19.68■□□□□ 0.74
MBD4O95243 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
MBD4O95243 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.68■□□□□ 0.74
MBD4O95243 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC19.68■□□□□ 0.74
MBD4O95243 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 CNN2P2-201ENST00000443536 909 ntBASIC19.68■□□□□ 0.74
MBD4O95243 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC19.68■□□□□ 0.74
MBD4O95243 FAM86GP-201ENST00000448322 971 ntBASIC19.68■□□□□ 0.74
MBD4O95243 CNN2P3-201ENST00000450201 906 ntBASIC19.68■□□□□ 0.74
MBD4O95243 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC19.68■□□□□ 0.74
MBD4O95243 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 AL355385.1-201ENST00000606123 409 ntBASIC19.68■□□□□ 0.74
MBD4O95243 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 AC093512.1-201ENST00000617969 520 ntBASIC19.68■□□□□ 0.74
MBD4O95243 AL136317.3-201ENST00000618497 906 ntBASIC19.68■□□□□ 0.74
MBD4O95243 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.68■□□□□ 0.74
MBD4O95243 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
MBD4O95243 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
MBD4O95243 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MBD4O95243 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC19.67■□□□□ 0.74
MBD4O95243 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
MBD4O95243 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MBD4O95243 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC19.67■□□□□ 0.74
MBD4O95243 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
MBD4O95243 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MBD4O95243 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
MBD4O95243 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
MBD4O95243 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MBD4O95243 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MBD4O95243 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MBD4O95243 HLA-DRB6-201ENST00000411500 1235 ntBASIC19.67■□□□□ 0.74
MBD4O95243 AC098859.1-201ENST00000502915 1238 ntBASIC19.67■□□□□ 0.74
MBD4O95243 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC19.67■□□□□ 0.74
MBD4O95243 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms