Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 PAM16-215ENST00000577031 548 ntTSL 4 BASIC20.57■□□□□ 0.88
CACNA1FO60840 PRR29-204ENST00000577953 565 ntTSL 4 BASIC20.57■□□□□ 0.88
CACNA1FO60840 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CACNA1FO60840 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC20.57■□□□□ 0.88
CACNA1FO60840 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CACNA1FO60840 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
CACNA1FO60840 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CACNA1FO60840 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CACNA1FO60840 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC20.56■□□□□ 0.88
CACNA1FO60840 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC20.56■□□□□ 0.88
CACNA1FO60840 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC20.56■□□□□ 0.88
CACNA1FO60840 HFE2-206ENST00000634927 506 ntTSL 4 BASIC20.56■□□□□ 0.88
CACNA1FO60840 RAB34-223ENST00000636154 730 ntTSL 2 BASIC20.56■□□□□ 0.88
CACNA1FO60840 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CACNA1FO60840 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CACNA1FO60840 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC20.56■□□□□ 0.88
CACNA1FO60840 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CACNA1FO60840 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CACNA1FO60840 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CACNA1FO60840 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CACNA1FO60840 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC20.56■□□□□ 0.88
CACNA1FO60840 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC20.56■□□□□ 0.88
CACNA1FO60840 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CACNA1FO60840 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CACNA1FO60840 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
CACNA1FO60840 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1FO60840 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC20.55■□□□□ 0.88
CACNA1FO60840 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC20.55■□□□□ 0.88
CACNA1FO60840 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CACNA1FO60840 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC20.55■□□□□ 0.88
CACNA1FO60840 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.55■□□□□ 0.88
CACNA1FO60840 KRT8P37-201ENST00000451609 1420 ntBASIC20.55■□□□□ 0.88
CACNA1FO60840 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1FO60840 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1FO60840 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1FO60840 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1FO60840 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1FO60840 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1FO60840 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC20.55■□□□□ 0.88
CACNA1FO60840 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1FO60840 SYS1-203ENST00000414310 795 ntTSL 3 BASIC20.55■□□□□ 0.88
CACNA1FO60840 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1FO60840 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1FO60840 AC027369.6-201ENST00000525520 931 ntBASIC20.55■□□□□ 0.88
CACNA1FO60840 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC20.55■□□□□ 0.88
CACNA1FO60840 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1FO60840 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC20.55■□□□□ 0.88
CACNA1FO60840 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1FO60840 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1FO60840 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CACNA1FO60840 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC20.55■□□□□ 0.88
CACNA1FO60840 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC20.55■□□□□ 0.88
CACNA1FO60840 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC20.55■□□□□ 0.88
CACNA1FO60840 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC20.55■□□□□ 0.88
CACNA1FO60840 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC20.55■□□□□ 0.88
CACNA1FO60840 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1FO60840 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1FO60840 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1FO60840 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CACNA1FO60840 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1FO60840 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1FO60840 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1FO60840 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC20.54■□□□□ 0.88
CACNA1FO60840 CENPM-205ENST00000404067 905 ntTSL 3 BASIC20.54■□□□□ 0.88
CACNA1FO60840 HLA-DRB6-201ENST00000411500 1235 ntBASIC20.54■□□□□ 0.88
CACNA1FO60840 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1FO60840 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
CACNA1FO60840 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1FO60840 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1FO60840 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
CACNA1FO60840 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1FO60840 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1FO60840 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1FO60840 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CACNA1FO60840 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1FO60840 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1FO60840 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CACNA1FO60840 CENPM-206ENST00000407253 818 ntTSL 2 BASIC20.54■□□□□ 0.88
CACNA1FO60840 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC20.54■□□□□ 0.88
CACNA1FO60840 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC20.54■□□□□ 0.88
CACNA1FO60840 NAA60-208ENST00000570819 833 ntTSL 2 BASIC20.54■□□□□ 0.88
CACNA1FO60840 SPIB-207ENST00000597855 564 ntTSL 4 BASIC20.54■□□□□ 0.88
CACNA1FO60840 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC20.54■□□□□ 0.88
CACNA1FO60840 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CACNA1FO60840 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CACNA1FO60840 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1FO60840 AL691432.1-201ENST00000596308 1422 ntBASIC20.53■□□□□ 0.88
CACNA1FO60840 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
CACNA1FO60840 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1FO60840 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC20.53■□□□□ 0.88
CACNA1FO60840 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CACNA1FO60840 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1FO60840 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CACNA1FO60840 SP100-205ENST00000409824 1802 ntTSL 5 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms