Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RPAP1Q9BWH6 HARS-204ENST00000438307 1789 ntTSL 2 BASIC20.08■□□□□ 0.8
RPAP1Q9BWH6 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 AC006449.5-201ENST00000610658 2098 ntBASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 TUBB3P1-201ENST00000405796 1332 ntBASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 AC107890.1-201ENST00000422478 521 ntBASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 AC055876.3-201ENST00000431496 288 ntBASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 HLA-J-202ENST00000469281 1241 ntBASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 AC125807.1-201ENST00000483097 614 ntBASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 SIGLEC29P-201ENST00000599873 1114 ntBASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 AC138649.4-201ENST00000612222 287 ntBASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RPAP1Q9BWH6 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 CES3-203ENST00000543856 3178 ntTSL 2 BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 RBPMS2P1-201ENST00000437762 623 ntBASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 AC140878.1-201ENST00000565277 250 ntBASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 NAA60-208ENST00000570819 833 ntTSL 2 BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 AC138761.1-201ENST00000584393 385 ntBASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 AL031055.1-201ENST00000606362 631 ntBASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
RPAP1Q9BWH6 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 BAD-202ENST00000394531 631 ntTSL 3 BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 GATD1-206ENST00000526325 756 ntTSL 5 BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 BAD-207ENST00000544785 525 ntTSL 3 BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 AC239800.4-201ENST00000603712 296 ntBASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RPAP1Q9BWH6 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC20.04■□□□□ 0.8
RPAP1Q9BWH6 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms