Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 AL512652.2-201ENST00000625156 1716 ntBASIC17.06■□□□□ 0.32
CDCA3Q99618 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDCA3Q99618 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.06■□□□□ 0.32
CDCA3Q99618 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDCA3Q99618 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.06■□□□□ 0.32
CDCA3Q99618 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDCA3Q99618 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDCA3Q99618 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CDCA3Q99618 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 AL391256.1-201ENST00000443260 1855 ntBASIC17.05■□□□□ 0.32
CDCA3Q99618 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CDCA3Q99618 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.05■□□□□ 0.32
CDCA3Q99618 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 CDC14C-201ENST00000428251 1719 ntBASIC17.05■□□□□ 0.32
CDCA3Q99618 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC17.05■□□□□ 0.32
CDCA3Q99618 ACTBP11-201ENST00000436287 1126 ntBASIC17.05■□□□□ 0.32
CDCA3Q99618 CROCCP4-201ENST00000457096 498 ntBASIC17.05■□□□□ 0.32
CDCA3Q99618 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
CDCA3Q99618 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.05■□□□□ 0.32
CDCA3Q99618 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC17.05■□□□□ 0.32
CDCA3Q99618 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.05■□□□□ 0.32
CDCA3Q99618 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.05■□□□□ 0.32
CDCA3Q99618 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.05■□□□□ 0.32
CDCA3Q99618 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.05■□□□□ 0.32
CDCA3Q99618 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.05■□□□□ 0.32
CDCA3Q99618 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
CDCA3Q99618 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.05■□□□□ 0.32
CDCA3Q99618 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.05■□□□□ 0.32
CDCA3Q99618 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.05■□□□□ 0.32
CDCA3Q99618 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDCA3Q99618 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
CDCA3Q99618 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.05■□□□□ 0.32
CDCA3Q99618 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
CDCA3Q99618 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.04■□□□□ 0.32
CDCA3Q99618 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
CDCA3Q99618 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.04■□□□□ 0.32
CDCA3Q99618 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.04■□□□□ 0.32
CDCA3Q99618 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CDCA3Q99618 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
CDCA3Q99618 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.04■□□□□ 0.32
CDCA3Q99618 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.04■□□□□ 0.32
CDCA3Q99618 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC17.04■□□□□ 0.32
CDCA3Q99618 BNIP3P42-201ENST00000454982 569 ntBASIC17.04■□□□□ 0.32
CDCA3Q99618 USP32P1-208ENST00000506594 1164 ntBASIC17.04■□□□□ 0.32
CDCA3Q99618 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.04■□□□□ 0.32
CDCA3Q99618 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC17.04■□□□□ 0.32
CDCA3Q99618 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.04■□□□□ 0.32
CDCA3Q99618 BNIP3P29-201ENST00000598302 571 ntBASIC17.04■□□□□ 0.32
CDCA3Q99618 AL365330.1-201ENST00000607459 531 ntBASIC17.04■□□□□ 0.32
CDCA3Q99618 AC011447.5-201ENST00000616168 564 ntBASIC17.04■□□□□ 0.32
CDCA3Q99618 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
CDCA3Q99618 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CDCA3Q99618 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.04■□□□□ 0.32
CDCA3Q99618 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.04■□□□□ 0.32
CDCA3Q99618 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.04■□□□□ 0.32
CDCA3Q99618 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDCA3Q99618 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDCA3Q99618 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.03■□□□□ 0.32
CDCA3Q99618 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDCA3Q99618 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CDCA3Q99618 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDCA3Q99618 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CDCA3Q99618 HTR7P1-202ENST00000624664 4411 ntBASIC17.03■□□□□ 0.32
CDCA3Q99618 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.03■□□□□ 0.32
CDCA3Q99618 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.03■□□□□ 0.32
CDCA3Q99618 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
CDCA3Q99618 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms